View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13042_high_5 (Length: 427)
Name: NF13042_high_5
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13042_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 28 - 415
Target Start/End: Original strand, 31764581 - 31764969
Alignment:
| Q |
28 |
gttgtagatactaataaattagtttttaactgttttttagtcggattttaccattcctttgtaaaatcatgcaaagggaatggaataatcatgttggtga |
127 |
Q |
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| T |
31764581 |
gttgtagatactaataaattagtttttaactgttttttagttggattttaccattcctttgtaaaaacatgcaaagggaatggaataatcatgttggtga |
31764680 |
T |
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| Q |
128 |
catctctaatcattattatgattattactttcattctaaagaaactaattgaccaattttacattacaaattatatataattaattgattgatgggccta |
227 |
Q |
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| T |
31764681 |
catctctaatcattattatgattattactttcattctaaagaaactaattgaccaattttacattacaaattatatataattaattgattgatgggccta |
31764780 |
T |
|
| Q |
228 |
ttgtctcaacactccttaaagcacaatgaaactaaacaatacacaatcactttgtcaaatcatggtaaactatatagaatggttaccttgttttctttct |
327 |
Q |
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| T |
31764781 |
ttgtctcaacactccttaaagcacaatgaaactaaacaatacacaatcactttgtcaaataatggtaaactatatagaatggttacattgttttctttct |
31764880 |
T |
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| Q |
328 |
tgtaagtggtgttcaatcaccattcaaagatgtgcatta-nnnnnnnnctggtataaaagaagaaatattctatttacacacttcatat |
415 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||| |
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| T |
31764881 |
tgtaagtggtgctcaatcaccattcaaagatgtgcattattttttattctggtataaaataaggaatattctatttacacatttcatat |
31764969 |
T |
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