View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13042_high_7 (Length: 415)
Name: NF13042_high_7
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13042_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 12811721 - 12811973
Alignment:
| Q |
20 |
gggtcacccttgtggtccctcttctgtgcggttccttttcggtggaacctcaaatttgagacatgcatggtgtgggcgaaagtactcaaatcgtttcaaa |
119 |
Q |
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| T |
12811721 |
gggtcacccttgtggtccctcttctgtgcggttccttttcggtggaacctcaaatttgagacatgcatggtgtgggcgaaagtactcaaatcgtttcaaa |
12811820 |
T |
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| Q |
120 |
atggaaaaccatatacactaataacaaatattcgcatatacgtacgaaaagggtaagtgtgataattctatcnnnnnnntaaaagggtaggtggtaatac |
219 |
Q |
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| T |
12811821 |
atggaaaaccatatacactaataacaaatattcgcatatacgtacgaaaagggtaagtgtgataattctatcaaaaaaataaaagggtaggtggtaatac |
12811920 |
T |
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| Q |
220 |
cactgtggtattactactcccaatctgattatgcttgtcatatttatattgag |
272 |
Q |
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| T |
12811921 |
cactgtggtattactactcccaatctgattatgcttgtcatatttatattgag |
12811973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Original strand, 12812076 - 12812107
Alignment:
| Q |
375 |
tgactgctataatacacccattatagtataat |
406 |
Q |
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| T |
12812076 |
tgactgctataatacacccattatagtataat |
12812107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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