View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13042_high_9 (Length: 315)

Name: NF13042_high_9
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13042_high_9
NF13042_high_9
[»] chr7 (13 HSPs)
chr7 (51-315)||(7063021-7063285)
chr7 (15-109)||(7058725-7058819)
chr7 (15-94)||(7013973-7014052)
chr7 (15-94)||(7029331-7029410)
chr7 (205-266)||(7058318-7058379)
chr7 (206-270)||(7013653-7013717)
chr7 (206-270)||(7029011-7029075)
chr7 (114-155)||(7029204-7029245)
chr7 (213-249)||(7056680-7056716)
chr7 (216-249)||(7010836-7010869)
chr7 (114-155)||(7013846-7013887)
chr7 (216-249)||(7026194-7026227)
chr7 (114-163)||(7058608-7058657)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 51 - 315
Target Start/End: Complemental strand, 7063285 - 7063021
Alignment:
Q  51 tgaattactgtcaagagagcatattttgcaatgaacgtagtagttgaataaaagtgcttaaattttatattggaatggttaaagtttaaatggtattagt 150  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7063285 tgaataactgtcaagagagcatattttgcaatgaacgtagtagttgaataaaagtgcttaaattttatattggaatggttaaagtttaaatggtattagt 7063186  T
Q  151 attcatgattagaagagctttgagtttgatttacttttgacagtatttgtttgatttgggggatgtactacttgaaggagtggatttgtttttaaataaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7063185 attcatgattagaagagctttgagtttgatttacttttgacagtacttgtttgatttgggggatgtactacttgaaggagtggatttgtttttaaataaa 7063086  T
Q  251 tgattctgtcaacgttgtctcnnnnnnnattatgagatgtggttgtattaaaaagacaaatgtat 315  Q
    |||||||||||||||||||||       |||| ||||||||||||||||||||||||||||||||    
T  7063085 tgattctgtcaacgttgtctctttttttattaagagatgtggttgtattaaaaagacaaatgtat 7063021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 7058819 - 7058725
Alignment:
Q  15 aataagatatgaatgttggaaagttgcttaaatttgtgaattactgtcaagagagcatattttgcaatgaacgtagtagttgaataaaagtgctt 109  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  7058819 aataacatatgaatgttggaaagttgcttaaatttatgaattactgtcaagagagcatattttgcaatcaacgtagtagtcgaataaaagtgctt 7058725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 7014052 - 7013973
Alignment:
Q  15 aataagatatgaatgttggaaagttgcttaaatttgtgaattactgtcaagagagcatattttgcaatgaacgtagtagt 94  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  7014052 aataacatatgaatgttggaaagttgcttaaatttatgaattactgtcaagagagcatattttgcaatgaatgtagtagt 7013973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 7029410 - 7029331
Alignment:
Q  15 aataagatatgaatgttggaaagttgcttaaatttgtgaattactgtcaagagagcatattttgcaatgaacgtagtagt 94  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  7029410 aataacatatgaatgttggaaagttgcttaaatttatgaattactgtcaagagagcatattttgcaatgaatgtagtagt 7029331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 7058379 - 7058318
Alignment:
Q  205 tttgggggatgtactacttgaaggagtggatttgtttttaaataaatgattctgtcaacgtt 266  Q
    |||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7058379 tttgggggttgtcctacttgaaggagtggattagtttttaaataaatgattctgtcaacgtt 7058318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 7013717 - 7013653
Alignment:
Q  206 ttgggggatgtactacttgaaggagtggatttgtttttaaataaatgattctgtcaacgttgtct 270  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||    
T  7013717 ttgggggctgtactacttgaaggagtggattagtttttaaataaatcattctgtcaacattgtct 7013653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 7029075 - 7029011
Alignment:
Q  206 ttgggggatgtactacttgaaggagtggatttgtttttaaataaatgattctgtcaacgttgtct 270  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||    
T  7029075 ttgggggctgtactacttgaaggagtggattagtttttaaataaatcattctgtcaacattgtct 7029011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 7029245 - 7029204
Alignment:
Q  114 tttatattggaatggttaaagtttaaatggtattagtattca 155  Q
    ||||| ||||||||||||||||||| ||||||||||||||||    
T  7029245 tttatgttggaatggttaaagtttagatggtattagtattca 7029204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 7056716 - 7056680
Alignment:
Q  213 atgtactacttgaaggagtggatttgtttttaaataa 249  Q
    |||||||||||||||||||||||| ||||||||||||    
T  7056716 atgtactacttgaaggagtggattagtttttaaataa 7056680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 7010869 - 7010836
Alignment:
Q  216 tactacttgaaggagtggatttgtttttaaataa 249  Q
    ||||||||||||||||||||| ||||||||||||    
T  7010869 tactacttgaaggagtggattagtttttaaataa 7010836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 7013887 - 7013846
Alignment:
Q  114 tttatattggaatggttaaagtttaaatggtattagtattca 155  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||    
T  7013887 tttatgttgaaatggttaaagtttagatggtattagtattca 7013846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 7026227 - 7026194
Alignment:
Q  216 tactacttgaaggagtggatttgtttttaaataa 249  Q
    ||||||||||||||||||||| ||||||||||||    
T  7026227 tactacttgaaggagtggattagtttttaaataa 7026194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 7058657 - 7058608
Alignment:
Q  114 tttatattggaatggttaaagtttaaatggtattagtattcatgattaga 163  Q
    ||||||||||||||||| |||||||  | ||||||| |||||||||||||    
T  7058657 tttatattggaatggttgaagtttagcttgtattaggattcatgattaga 7058608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University