View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13042_low_11 (Length: 312)
Name: NF13042_low_11
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13042_low_11 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 23 - 312
Target Start/End: Complemental strand, 13651883 - 13651594
Alignment:
| Q |
23 |
tccaagagtttgggcatacagaaataaatccagacggtactagcagcaacagtacgaaaatgtatcaactgtatcccaaattcagcggccaaatcagtag |
122 |
Q |
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| T |
13651883 |
tccaagagtttgggcatacagaaataaatccagacggtactagcagcaacagtacgaaaatgtatcaactgtatcccaaattcagcagccaaatcagtag |
13651784 |
T |
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| Q |
123 |
caaggtcaccaaaacctccatctaaaataatgcaacttattttctcagagacaacaatgtctctcaaagaaggcttaccatacatatttatggaggaaat |
222 |
Q |
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| T |
13651783 |
caaggtcaccaaaacctccatctaaaataatgcaacttattttctcagagacaataatgtctctcaaagaaggcttaccatacatatttatggaggaaat |
13651684 |
T |
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| Q |
223 |
tacatctacaatgttttctccaaatccaggatgcttctccttattttgaaaatcagagatggtcttgaattgaagcttagggtaacattg |
312 |
Q |
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| T |
13651683 |
tacatctacaatgttttctccaaatccaggatgcttctccttattttgaaaatcagagatggtcttgaattgaagcttagggtaacattg |
13651594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 73 - 311
Target Start/End: Complemental strand, 13657078 - 13656840
Alignment:
| Q |
73 |
agtacgaaaatgtatcaactgtatcccaaattcagcggccaaatcagtagcaaggtcaccaaaacctccatctaaaataatgcaacttattttctcagag |
172 |
Q |
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| T |
13657078 |
agtacgaaaatgaatcaattgtatcccaaactcagcagccaaatcagtagcaagatcaccaaatattccatccaaaataatgcaacttattttctcggag |
13656979 |
T |
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| Q |
173 |
acaacaatgtctctcaaagaaggcttaccatacatatttatggaggaaattacatctacaatgttttctccaaatccaggatgcttctccttattttgaa |
272 |
Q |
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| T |
13656978 |
acaattatatctttcaacaaaggcttaccatacaaactcagtgacaaaattacatcacctaccttttctccaaatccaggatgtttctcctcactgtgaa |
13656879 |
T |
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| Q |
273 |
aatcagagatggtcttgaattgaagcttagggtaacatt |
311 |
Q |
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| T |
13656878 |
aatcagagatggtcttgaattgaagcttagggtaacatt |
13656840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 73 - 311
Target Start/End: Complemental strand, 13646752 - 13646514
Alignment:
| Q |
73 |
agtacgaaaatgtatcaactgtatcccaaattcagcggccaaatcagtagcaaggtcaccaaaacctccatctaaaataatgcaacttattttctcagag |
172 |
Q |
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| T |
13646752 |
agtacgaaaatgaatcaattgtattccaaactcagcagccaaatcagtagcaagatcaccaaatattccatccaaaataatgcaacttattttctcggag |
13646653 |
T |
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| Q |
173 |
acaacaatgtctctcaaagaaggcttaccatacatatttatggaggaaattacatctacaatgttttctccaaatccaggatgcttctccttattttgaa |
272 |
Q |
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|||| || ||| |||| ||||||||||||||| | | | || | ||||||||| | || ||||||||||||||||||||||||| | | | |||| |
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| T |
13646652 |
acaattatatctttcaacaaaggcttaccatacaaactcagtgacgtaattacatcacctatcctttctccaaatccaggatgcttctcttcactatgaa |
13646553 |
T |
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| Q |
273 |
aatcagagatggtcttgaattgaagcttagggtaacatt |
311 |
Q |
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| T |
13646552 |
aatcagagatagtcttgaattgaagcttagggtaacatt |
13646514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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