View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13042_low_13 (Length: 307)
Name: NF13042_low_13
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13042_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 31046837 - 31046590
Alignment:
| Q |
19 |
ataataagggtactcaatcttctactatataagt---tttaatataattatctttaactctatatccatttttagatcttacataaacataaactgattc |
115 |
Q |
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| T |
31046837 |
ataataagggtactcaatcttctaccatataagtagttttaatataattatctttaactctatatccatttttagatcttacataaacataaaatgattc |
31046738 |
T |
|
| Q |
116 |
cgggtgagtttgtataagatttgcgaagaaataaatataattgaacagagtttacataaacatatatgaagtaagtatgcataagatct-nnnnnnnntg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31046737 |
cgggtgagtttgtataagatttgcgaagaaataaatataattgaacagagtttacataaacatatatgaagtaagtatgcataagatctaaaaaaaaatg |
31046638 |
T |
|
| Q |
215 |
aattgagtttacacataaatgtatactttaactgaattaaattagaat |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31046637 |
aattgagtttacacataaatgtatactttaactgaattaaattagaat |
31046590 |
T |
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