View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13042_low_14 (Length: 302)
Name: NF13042_low_14
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13042_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 3030940 - 3030666
Alignment:
| Q |
16 |
atcatccacatccaataatagtgaagcgtgtcaaattgagaagttccataaagaaactatctgagtgtcaaatatctccatgtcatcatatttactacca |
115 |
Q |
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| T |
3030940 |
atcatccacatccaataatagtgaagcgtgtcaaattgagaagttccacaaagaaactatctgagtgtcaaatatctccatgtcatcatagttactacca |
3030841 |
T |
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| Q |
116 |
taataatttgtaggggaaggaggattagaacgtaaaggctcattagcaatactcaaaagcaaattatgatgcatgtcttcaaattctgacgatagaactg |
215 |
Q |
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| T |
3030840 |
taataatttgtaggggaaggaggattagaacgtaaaggctcattagcaatactcaaaagcaaattatgatgcatgtcttcaaattctgacgatagaactg |
3030741 |
T |
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| Q |
216 |
gaacttgtacttctagcacattctttttagaatcttccatatccatatccacagcatccctatcactcctctgat |
290 |
Q |
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| T |
3030740 |
gaacttgtacttctagcacattctttttagaattttccatattcatatccacagcatccctatcactcctctgat |
3030666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 240
Target Start/End: Complemental strand, 3021695 - 3021499
Alignment:
| Q |
41 |
gcgtgtcaaattgagaagttccataaagaaactatctgagtgtcaaatatctccatgtcatcatatttactaccataataatttgtaggggaaggaggat |
140 |
Q |
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| T |
3021695 |
gcgtttcaaatagagaagttccaaagtgaaactaattgagtatcaaaaatctccatgtcaccccagttataactaccataatttgttggggaaggaggag |
3021596 |
T |
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| Q |
141 |
tagaacgtaaaggctcattagcaatactcaaaagcaaattatgatgcatgtcttcaaattctgacgatagaactggaacttgtacttctagcacattctt |
240 |
Q |
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| T |
3021595 |
ctgaacgtaaaggctcattggcaatacttagaagcaa---atgatgcatgtcttcaaattctgatgacaccactggaacctgtgcttctagcatattctt |
3021499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 46 - 240
Target Start/End: Complemental strand, 3038559 - 3038368
Alignment:
| Q |
46 |
tcaaattgagaagttccataaagaaactatctgagtgtcaaatatctccatgtcatcatatttactaccataataatttgtaggggaaggaggattagaa |
145 |
Q |
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| T |
3038559 |
tcaaatagagaagttccaaagtgaaactaattgagtatcaaaaatctccatgtcaccccagttataactaccataatttgttggggaaggaggagctgaa |
3038460 |
T |
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| Q |
146 |
cgtaaaggctcattagcaatactcaaaagcaaattatgatgcatgtcttcaaattctgacgatagaactggaacttgtacttctagcacattctt |
240 |
Q |
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| T |
3038459 |
cgtaaaggctcattggcaatacttagaagcaa---atgatgcatgtcttcaaattctgatgacaccactggaacctgtgcttctagcatattctt |
3038368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 121 - 290
Target Start/End: Complemental strand, 32752584 - 32752418
Alignment:
| Q |
121 |
atttgtaggggaaggaggattagaacgtaaaggctcattagcaatactcaaaagcaaattatgatgcatgtcttcaaattctgacgatagaactggaact |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||| |
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| T |
32752584 |
atttgtaggggaaggaggattagaacgtaaaggctcattagcaatactcaaaagcaaatcatg---catgtcttccaattctgacgatagaactggaact |
32752488 |
T |
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| Q |
221 |
tgtacttctagcacattctttttagaatcttccatatccatatccacagcatccctatcactcctctgat |
290 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
32752487 |
tgtacttctaccacattctttttagaatcttccatatccataaccactgcatccctatcactcctctgat |
32752418 |
T |
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