View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13042_low_15 (Length: 294)

Name: NF13042_low_15
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13042_low_15
NF13042_low_15
[»] chr8 (6 HSPs)
chr8 (171-294)||(38815946-38816069)
chr8 (12-104)||(38815547-38815639)
chr8 (100-172)||(38815728-38815800)
chr8 (108-247)||(39456470-39456610)
chr8 (32-101)||(39456301-39456371)
chr8 (32-104)||(39464003-39464076)
[»] chr1 (1 HSPs)
chr1 (101-259)||(39407081-39407241)
[»] chr5 (1 HSPs)
chr5 (110-259)||(20148233-20148390)
[»] scaffold0095 (3 HSPs)
scaffold0095 (108-247)||(13130-13270)
scaffold0095 (32-101)||(13369-13439)
scaffold0095 (32-104)||(24425-24498)
[»] chr2 (4 HSPs)
chr2 (140-259)||(12088078-12088199)
chr2 (132-286)||(12081236-12081382)
chr2 (12-101)||(12087859-12087948)
chr2 (12-103)||(12081045-12081135)


Alignment Details
Target: chr8 (Bit Score: 124; Significance: 8e-64; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 171 - 294
Target Start/End: Original strand, 38815946 - 38816069
Alignment:
Q  171 tatgtggttaagaaatgattatattgattattgcaatactaactaaagttctatagcattccatttggttggatacttttctattttattttttcttatg 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815946 tatgtggttaagaaatgattatattgattattgcaatactaactaaagttctatagcattccatttggttggatacttttctattttattttttcttatg 38816045  T
Q  271 cactattgtttttgtgttaaacat 294  Q
    ||||||||||||||||||||||||    
T  38816046 cactattgtttttgtgttaaacat 38816069  T

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Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 38815547 - 38815639
Alignment:
Q  12 atgaagcagatctagtttagaaaaagaaggttaaaattaagccatgtgctgaaagacaagtgagcctatttgcacaaagaagcttgagtggtg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815547 atgaagcagatctagtttagaaaaagaaggttaaaattaagccatgtgctgaaagacaagtgagcctatttgcacaaagaagcttgagtggtg 38815639  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 38815728 - 38815800
Alignment:
Q  100 tggtgctgcaaatgccccttgtggtagaatgcgatctatgatgctatttcaactttcaattggctaaatctta 172  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815728 tggtgcttcaaatgccccttgtggtagaatgcgatctatgatgctatttcaactttcaattggctaaatctta 38815800  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 108 - 247
Target Start/End: Original strand, 39456470 - 39456610
Alignment:
Q  108 caaatgccccttgtggtagaatgcgatctatgatgctatttcaactttcaattggctaaatcttatgtggttaagaaatg--attatattgattattgca 205  Q
    |||||| ||||||||||| |||| ||  || | ||||||||||||||||||||| |||||||||||||| ||||||||||  ||||| ||||||||| ||    
T  39456470 caaatgtcccttgtggtaaaatgtgaa-tacggtgctatttcaactttcaattgactaaatcttatgtgattaagaaatgacattatgttgattattaca 39456568  T
Q  206 atactaactaaagttctatagcattccatttggttggatact 247  Q
     |||||| || |||  ||||||||| ||||||||||||||||    
T  39456569 gtactaattagagtgttatagcattacatttggttggatact 39456610  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 39456301 - 39456371
Alignment:
Q  32 aaaaagaaggttaaaattaagccatg-tgctgaaagacaagtgagcctatttgcacaaagaagcttgagtg 101  Q
    |||||||  ||||||||| ||||||  ||||||||||||||||||||||||||||||| ||||||||||||    
T  39456301 aaaaagattgttaaaattgagccattatgctgaaagacaagtgagcctatttgcacaatgaagcttgagtg 39456371  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 39464003 - 39464076
Alignment:
Q  32 aaaaagaaggttaaaattaagccatg-tgctgaaagacaagtgagcctatttgcacaaagaagcttgagtggtg 104  Q
    |||||||||| ||||||| ||||||  ||||||| | |||||||||| ||||||||||||||||||||||||||    
T  39464003 aaaaagaaggctaaaattgagccattatgctgaatgtcaagtgagccaatttgcacaaagaagcttgagtggtg 39464076  T

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Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 101 - 259
Target Start/End: Complemental strand, 39407241 - 39407081
Alignment:
Q  101 ggtgctgcaaatgccccttgtggtagaatgcgatctatgatgctatttcaactttcaattggctaaatcttatgtggttaagaaatg--attatattgat 198  Q
    |||||| |||||||| ||| |||||||||| ||||||||||| |||||||||||| ||||| |||||||||||||||||| ||||||  |||||||||||    
T  39407241 ggtgcttcaaatgccgcttttggtagaatgtgatctatgatgatatttcaactttgaattgactaaatcttatgtggttaggaaatgaaattatattgat 39407142  T
Q  199 tattgcaatactaactaaagttctatagcattccatttggttggatacttttctattttat 259  Q
    ||||  |||||||||||||||  ||||||||||||||||||||||||||| ||||||||||    
T  39407141 tattagaatactaactaaagtgttatagcattccatttggttggatacttctctattttat 39407081  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 110 - 259
Target Start/End: Original strand, 20148233 - 20148390
Alignment:
Q  110 aatgccccttgtggtagaatgcgatctatgatgctatttcaactttcaattggctaaatcttatgtggttaagaaatg--attatattgatt------at 201  Q
    |||| ||| ||||||| |||| |||||||||||||||||| ||||||||||  |||||||||||||||||||||||||  ||||||||||||      ||    
T  20148233 aatgtcccctgtggtataatgagatctatgatgctatttctactttcaattaactaaatcttatgtggttaagaaatgatattatattgattattacaat 20148332  T
Q  202 tgcaatactaactaaagttctatagcattccatttggttggatacttttctattttat 259  Q
    | ||||||||||||||||  ||||||||||| |||||| |||||||| | ||||||||    
T  20148333 tacaatactaactaaagtgttatagcattccttttggtcggatacttgtatattttat 20148390  T

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Target: scaffold0095 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 108 - 247
Target Start/End: Complemental strand, 13270 - 13130
Alignment:
Q  108 caaatgccccttgtggtagaatgcgatctatgatgctatttcaactttcaattggctaaatcttatgtggttaagaaatg--attatattgattattgca 205  Q
    |||||| ||||||||||| |||| ||  || | ||||||||||||||||||||| |||||||||||||| ||||||||||  ||||| ||||||||| ||    
T  13270 caaatgtcccttgtggtaaaatgtgaa-tacggtgctatttcaactttcaattgactaaatcttatgtgattaagaaatgacattatgttgattattaca 13172  T
Q  206 atactaactaaagttctatagcattccatttggttggatact 247  Q
     |||||| || |||  ||||||||| ||||||||||||||||    
T  13171 gtactaattagagtgttatagcattacatttggttggatact 13130  T

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Target: scaffold0095; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 13439 - 13369
Alignment:
Q  32 aaaaagaaggttaaaattaagccatg-tgctgaaagacaagtgagcctatttgcacaaagaagcttgagtg 101  Q
    |||||||  ||||||||| ||||||  ||||||||||||||||||||||||||||||| ||||||||||||    
T  13439 aaaaagattgttaaaattgagccattatgctgaaagacaagtgagcctatttgcacaatgaagcttgagtg 13369  T

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Target: scaffold0095; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 24498 - 24425
Alignment:
Q  32 aaaaagaaggttaaaattaagccatg-tgctgaaagacaagtgagcctatttgcacaaagaagcttgagtggtg 104  Q
    |||||||||| ||||||| ||||||  ||||||| | |||||||||| ||||||||||||||||||||||||||    
T  24498 aaaaagaaggctaaaattgagccattatgctgaatgtcaagtgagccaatttgcacaaagaagcttgagtggtg 24425  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 140 - 259
Target Start/End: Original strand, 12088078 - 12088199
Alignment:
Q  140 atgctatttcaactttcaattggctaaatcttatgtggttaagaaatga--ttatattgattattgcaatactaactaaagttctatagcattccatttg 237  Q
    |||||||||| ||||||||||| |||||  |||  |||||||||||  |  |||||||||||||| |||||||| |||||||  | |||||||||||||     
T  12088078 atgctatttctactttcaattgactaaacattacatggttaagaaaaaacattatattgattattacaatactagctaaagtgttgtagcattccatttt 12088177  T
Q  238 gttggatacttttctattttat 259  Q
    ||||||||||| ||||||||||    
T  12088178 gttggatacttctctattttat 12088199  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 132 - 286
Target Start/End: Original strand, 12081236 - 12081382
Alignment:
Q  132 gatctatgatgctatttcaactttcaattggctaaatcttatgtggttaagaaatgattatattgattattgcaatactaactaaagttctatagcattc 231  Q
    |||||||||||||||||||||||||| ||| |||||||||||||| |||||| ||||  | |||| ||||     |||||||| ||||  |||||||||     
T  12081236 gatctatgatgctatttcaactttcagttgactaaatcttatgtgcttaagatatga-cacattg-ttat-----tactaactgaagtgttatagcattg 12081328  T
Q  232 catttggttggatacttttctattttattttttcttatgcactattgtttttgtg 286  Q
    |||||||||||||||| |||| ||||| | |||||||| || |||||||| ||||    
T  12081329 catttggttggatactgttctgtttta-tatttcttatacaatattgtttgtgtg 12081382  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 12087859 - 12087948
Alignment:
Q  12 atgaagcagatctagtttagaaaaagaaggttaaaattaagccatg-tgctgaaagacaagtgagcctatttgcacaaagaagcttgagtg 101  Q
    |||||||| ||||||||| ||||||||||| ||||||  ||||||  ||||||||||||| |||| | |||||||  || |||||||||||    
T  12087859 atgaagcatatctagttt-gaaaaagaaggctaaaatatagccattatgctgaaagacaaatgagacaatttgcattaaaaagcttgagtg 12087948  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 12081045 - 12081135
Alignment:
Q  12 atgaagcagatctagtttagaaaaagaaggttaaaattaagccatg-tgctgaaagacaagtgagcctatttgcacaaagaagcttgagtggt 103  Q
    |||||||||| ||||||| ||||||||||  ||||||||||||||  || |||| |||||||||||| |||||| ||||  ||||| ||||||    
T  12081045 atgaagcagagctagttt-gaaaaagaagtctaaaattaagccattatgttgaa-gacaagtgagccaatttgctcaaattagcttcagtggt 12081135  T

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