View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13042_low_16 (Length: 276)
Name: NF13042_low_16
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13042_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 8932859 - 8933106
Alignment:
| Q |
19 |
aataatccctcataaaaatcaggtttaatcacaactgcttgttcatacttttctctagctaaatagtatttttcctgaacaaaatcaaattcagattcgt |
118 |
Q |
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| T |
8932859 |
aataatccctcataaaaatcaggtttaatcacaactgcttgttcatacttttctctagctaaatagtatttttcctgaacaaaatcaaattcagattcgt |
8932958 |
T |
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| Q |
119 |
tcatcactaaaacctcattctcattttcatccattctaacaaatttcctagcagcacacatgtgaacatttccccaattgaaaaacgccaaagcagcaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8932959 |
tcatcactaaaacctcattctcattttcatccattctaacaaatttcctagcagcacacatgtgaacatttccccaattgaaaaacgccaaagcagcaac |
8933058 |
T |
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| Q |
219 |
ctcttgaaacttaaattcagctttgtcaagcaaatcttgagcttcatc |
266 |
Q |
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| T |
8933059 |
ctcttgaaacttaaattcagctttgtcaagcaaatcttgagcttcatc |
8933106 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 55533641 - 55533708
Alignment:
| Q |
163 |
ttcctagcagcacacatgtgaacatttccccaattgaaaaacgccaaagcagcaacctcttgaaactt |
230 |
Q |
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| T |
55533641 |
ttcctagcagcgcacatgtgaacattaccccagttgaagaatgccaatgctgccacctcctgaaactt |
55533708 |
T |
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