View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13042_low_17 (Length: 273)
Name: NF13042_low_17
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13042_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 7713490 - 7713324
Alignment:
| Q |
1 |
ttcgtttgagcataataaatgcctttgtgatgctcctttagcaccttgcaagggaggcctagctagcagcaagtaaatcaaagaagtataaatgagtcat |
100 |
Q |
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| T |
7713490 |
ttcgtttgagcataataaatgcctttgtgatgctcctttagcaccttgcaagggaggcctagctagcaccaagtaaatcaaagaagtataaatgagtcat |
7713391 |
T |
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| Q |
101 |
tatgtgaccattttatttccttaaaataatgttatatgttcggtattcatacacaaagaatactgca |
167 |
Q |
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| T |
7713390 |
tatgtgaccattttatttccttaaaataatgttatatgttcggtattcatacacaaagaatactgca |
7713324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 7699142 - 7698986
Alignment:
| Q |
4 |
gtttgagcataataaatgcctttgtgatgctcctttagcaccttgcaagggaggcctagctagcagcaagtaaatcaaagaagtataaatgagtcattat |
103 |
Q |
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| T |
7699142 |
gtttgagcataataaatgcctttgtggtgctcctttagcaccttgcaagtgaagcctacc----agcaagtaaataaaaggagtataattgagtctttgt |
7699047 |
T |
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| Q |
104 |
gtgaccattttatttccttaaaataatgttatatgttcggtattcatacacaaagaatact |
164 |
Q |
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| T |
7699046 |
atgactactttatttccttaaaataatgttatcagttcggtattcatacataatgaatact |
7698986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 7727007 - 7726848
Alignment:
| Q |
1 |
ttcgtttgagcataataaatgcctttgtgatgctcctttagcaccttgcaagggaggcctagctagcagcaagtaaatcaaagaagtataaatgagtcat |
100 |
Q |
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| T |
7727007 |
ttcgtttgatcataataaatgcctttgtggtgctcctttagcagcttgcaagtgaggc----ctaccagcaagtaaataaaagtaatatatttgagtcat |
7726912 |
T |
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| Q |
101 |
tatgtgaccattttatttccttaaaataatgttatatgttcggtattcatacacaaagaatact |
164 |
Q |
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| T |
7726911 |
tgtgtgaaaactttatttccctaaaataatgttacgtgttcagtattcatgcataaagaatact |
7726848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 7739325 - 7739167
Alignment:
| Q |
1 |
ttcgtttgagcataataaatgcctttgtgatgctcctttagcaccttgcaagggaggcctagctagcagcaagtaaatcaaagaagtataaatgagtcat |
100 |
Q |
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| T |
7739325 |
ttcgtttgatcataataaatgcctttgtggtgctcctttagcagcttgctagtgaggcctacc----agcaagtatataaaataa-tatatttgagtcat |
7739231 |
T |
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| Q |
101 |
tatgtgaccattttatttccttaaaataatgttatatgttcggtattcatacacaaagaatact |
164 |
Q |
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| T |
7739230 |
tgtgtgacaattttatttccctaaaataatgttctgtgttcagtattcatgcatatagaatact |
7739167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 7731167 - 7731107
Alignment:
| Q |
1 |
ttcgtttgagcataataaatgcctttgtgatgctcctttagcaccttgcaagggaggccta |
61 |
Q |
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| T |
7731167 |
ttcgtttgatcataataaatgcctttgtggtgctcctttagcagcttgcaagtgaggccta |
7731107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 7731035 - 7730964
Alignment:
| Q |
93 |
tgagtcattatgtgaccattttatttccttaaaataatgttatatgttcggtattcatacacaaagaatact |
164 |
Q |
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| T |
7731035 |
tgagtcattatgtgacaattttatttccataaaataatgcaatgtgttcggtattcctgcaaaaagaatact |
7730964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 7750235 - 7750193
Alignment:
| Q |
11 |
cataataaatgcctttgtgatgctcctttagcaccttgcaagg |
53 |
Q |
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| T |
7750235 |
cataataaatgcctttgtggtgctcctttatcaccttgcaagg |
7750193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 12908332 - 12908389
Alignment:
| Q |
4 |
gtttgagcataataaatgcctttgtgatgctcctttagcaccttgcaagggaggccta |
61 |
Q |
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| T |
12908332 |
gtttgagcataataaatgcctttgtggtgcacctttagcagcttgcaagtgaggccta |
12908389 |
T |
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