View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13042_low_2 (Length: 612)
Name: NF13042_low_2
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13042_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 313 - 593
Target Start/End: Original strand, 34955979 - 34956259
Alignment:
| Q |
313 |
tcttggttcatactcacacctgaaaactaggaagcaacaaaagaagttttccacattacactagaattagaaggtaaattttatccgtatgcgagtttac |
412 |
Q |
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| T |
34955979 |
tcttggttcatactcacacctgaaaactaggaagcaacaaaagaagttttccacattacactagaattagaaggtaaattttatccgtatgcgagtttac |
34956078 |
T |
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| Q |
413 |
cttcttgacacgtacatatccttcaattctacatcccccggatgacggtgctggtctttttgaatcctctgtaacatttaatttatcctccaaagctagc |
512 |
Q |
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| T |
34956079 |
cttcttgacacgtacatatccttcaattctacatcccccggatgacggtgctggtctttttgaatcctctgtaacatttaatttatcctccaaagctagc |
34956178 |
T |
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| Q |
513 |
ttatgatactctgaagggaaagacgccaatatattctccattgtctgcagcagagacacttcatatcaggcatgttgtact |
593 |
Q |
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| T |
34956179 |
ttataatactctgaagggaaagacgccaatatattctccattgtctgcagcagagacacttcatatcaggcatgttgtact |
34956259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 277
Target Start/End: Original strand, 34955671 - 34955943
Alignment:
| Q |
8 |
tggacatca-tcataagcttaggtgacaatttctttccaaaagataaatggtgtatggcatgcgacatgttcatttgagaagcatcaaatgaatgggcat |
106 |
Q |
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| T |
34955671 |
tggacatcactcataagcttaggtgacaatttctttccaaaagataaatggtgtacggcatgcgacatgttcatttgagaagcatcaaatgaatgggcat |
34955770 |
T |
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| Q |
107 |
cggatcttgctgagatgatcaagtttcctggaacctgcagagtgcaaaacagcttacgtttcggcataatatttaaaatac--agagaaaaataatagga |
204 |
Q |
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| T |
34955771 |
cggatcttgctgagatgatcaagtttcctggaacctgcagagtgcaaaacagcttatgtttcggcataatatttaaaatacagagagaaaaataatagga |
34955870 |
T |
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| Q |
205 |
agtcatatgccgtatattatatcatttatttctgctgttataatattgacaactgaagcttctattataatgc |
277 |
Q |
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| T |
34955871 |
agtcatatgccgtatattatatcatttatttctgctgttataatattgacaactgaagcttctattataatgc |
34955943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 31391785 - 31391666
Alignment:
| Q |
26 |
taggtgacaatttctttccaaaagataaatggtgtatggcatgcgacatgttcatttgagaagcatcaaatgaatgggcatcggatcttgctgagatgat |
125 |
Q |
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| T |
31391785 |
taggtgtcactttttttccaaaagatagatggttgatgacatgtgacatgttcatttgagaagcatcaaatgaatgtgcatctgatctagctgagacaac |
31391686 |
T |
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| Q |
126 |
caagtttcctggaacctgca |
145 |
Q |
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| T |
31391685 |
caagcttcctggaacctgca |
31391666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 404 - 474
Target Start/End: Complemental strand, 31391327 - 31391257
Alignment:
| Q |
404 |
cgagtttaccttcttgacacgtacatatccttcaattctacatcccccggatgacggtgctggtctttttg |
474 |
Q |
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| T |
31391327 |
cgagtttacctttttcacacgcacatatccctcaactctacatccaccggttgacggtgctggtctttttg |
31391257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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