View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13042_low_21 (Length: 252)
Name: NF13042_low_21
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13042_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 34546024 - 34545783
Alignment:
| Q |
1 |
tatgtagaatataaaaatcagtgaacgaaatgtaaagcccgtactaaattgtctaaagtatttagctaagtattgatttagtactaaatacattaaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34546024 |
tatgtagaatataaaaatcagtgaacgaaatgtaaagcccgtactaaattgtctaaagtatttagctaagtattaatttagtactaaatacattaaaatt |
34545925 |
T |
|
| Q |
101 |
tacggcataaacaattttgttcaaatgaattacatcaaaaacataagattttgtctgatacattattaatatgggtgtacattttttataactatttttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34545924 |
tacggcataaacaattttgttcaaatgaattacatcaaaaacataagattttgtctgatacattattaatatgggtgtacattttttataactatttttg |
34545825 |
T |
|
| Q |
201 |
ttttgtgtctttatctactgtgtgggtaatatttcttctgtg |
242 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
34545824 |
ttttgtgtctttaactactgtgtgggtaatatttcttgtgtg |
34545783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University