View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13042_low_24 (Length: 243)

Name: NF13042_low_24
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13042_low_24
NF13042_low_24
[»] chr8 (4 HSPs)
chr8 (1-206)||(38816070-38816275)
chr8 (1-201)||(39456694-39456895)
chr8 (102-175)||(2816664-2816737)
chr8 (152-200)||(39464086-39464134)
[»] chr2 (2 HSPs)
chr2 (19-191)||(12081408-12081580)
chr2 (19-195)||(12088230-12088404)
[»] chr1 (1 HSPs)
chr1 (93-201)||(39406863-39406964)
[»] scaffold0095 (2 HSPs)
scaffold0095 (1-172)||(12874-13046)
scaffold0095 (152-200)||(24367-24415)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 38816070 - 38816275
Alignment:
Q  1 aagttgaattcattactctgtattctgtagaaccaatactgcgcaccggcagatttcaaaaataagctgtccgcaaaactggtggatcttgtatctagtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816070 aagttgaattcattactctgtattctgtagaaccaatactgcgcaccggcagatttcaaaaataagctgtccgcaaaactggtggatcttgtatctagtg 38816169  T
Q  101 gaaaactgatcaaggtatattacaacatgtttcattatgtcataactattccatctcatgcaaacatacaataaaaattgtcgtaaatgcatttgttttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816170 gaaaactgatcaaggtatattacaacatgtttcattatgtcataactattccatctcatgcaaacatacaataaaaattgtcgtaaatgcatttgttttc 38816269  T
Q  201 aacaac 206  Q
    ||||||    
T  38816270 aacaac 38816275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 39456694 - 39456895
Alignment:
Q  1 aagttgaatt-cattactctgtattctgtagaaccaatactgcgcaccggcagatttcaaaaataagctgtccgcaaaactggtggatcttgtatctagt 99  Q
    |||||||||| ||| ||| |||||||||||| |||||||| |  |||| ||||| ||||||||   | |||| |||||||||  | |||||  ||||||     
T  39456694 aagttgaatttcatcactttgtattctgtaggaccaataccggccacctgcagacttcaaaaagttgttgtcagcaaaactgaagtatcttacatctagc 39456793  T
Q  100 ggaaaactgatcaaggtatattacaacatgtttcattatgtcataactattccatctcatgcaaacatacaataaaaattgtcgtaaatgcatttgtttt 199  Q
    |||||| |||| |||||||||| ||||||||||||||||||| |||||  ||||||| ||||||||||||||||||||||||| ||| ||||||||||||    
T  39456794 ggaaaattgattaaggtatattgcaacatgtttcattatgtcttaactcatccatctaatgcaaacatacaataaaaattgtcataattgcatttgtttt 39456893  T
Q  200 ca 201  Q
    ||    
T  39456894 ca 39456895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 2816737 - 2816664
Alignment:
Q  102 aaaactgatcaaggtatattacaacatgtttcattatgtcataactattccatctcatgcaaacatacaataaa 175  Q
    ||||||||||||||||| || ||| |||||||||||||||||||||  ||||||| ||  |||||| |||||||    
T  2816737 aaaactgatcaaggtattttgcaatatgtttcattatgtcataactcatccatctgatttaaacatgcaataaa 2816664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 39464086 - 39464134
Alignment:
Q  152 catctcatgcaaacatacaataaaaattgtcgtaaatgcatttgttttc 200  Q
    ||||| |||||| |||| |||||||||| || |||||||||||||||||    
T  39464086 catctgatgcaatcatagaataaaaattatcataaatgcatttgttttc 39464134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 12081408 - 12081580
Alignment:
Q  19 tgtattctgtagaaccaatactgcgcaccggcagatttcaaaaataagctgtccgcaaaactggtggatcttgtatctagtggaaaactgatcaaggtat 118  Q
    |||||||||||| |||| ||||| |||||||| || ||||||||   |||||| |||||||||    |||||  |||| |||||||||||||||||||||    
T  12081408 tgtattctgtaggaccattactgggcaccggctgacttcaaaaagctgctgtcagcaaaactgaaatatcttacatctcgtggaaaactgatcaaggtat 12081507  T
Q  119 attacaacatgtttcattatgtcataactattccatctcatgcaaacatacaataaaaattgtcgtaaatgca 191  Q
    ||||||||| ||||||| |||||||||||  ||||||| |||||||| |||||||||||| ||| ||||||||    
T  12081508 attacaacacgtttcatcatgtcataactcatccatctaatgcaaacttacaataaaaatcgtcataaatgca 12081580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 12088230 - 12088404
Alignment:
Q  19 tgtattctgtagaaccaatactgcgcaccggcagatttcaaaaataagct-gtccgcaaaactggtggatcttgtatctagtggaaaactgatcaaggta 117  Q
    |||||||||||| | |||||||| ||||||| ||| |||||||| | | | ||| |||||||||  | |||||| ||||||||||||||||||||| |||    
T  12088230 tgtattctgtaggagcaatactgggcaccgggagacttcaaaaagatgtttgtcagcaaaactgaagtatcttgcatctagtggaaaactgatcaatgta 12088329  T
Q  118 tattacaacatgtttcattatgtcataactattccatctcatgcaaacatacaataaaaattgtcgtaaatgcatttg 195  Q
    || |||||||||||   ||||||  |||||  ||| ||| |||||||||||||||||| |||||| | ||||||||||    
T  12088330 tactacaacatgtt---ttatgttctaactcatccctctgatgcaaacatacaataaatattgtcattaatgcatttg 12088404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 93 - 201
Target Start/End: Complemental strand, 39406964 - 39406863
Alignment:
Q  93 atctagtggaaaactgatcaaggtatattacaacatgtttcattatgtcataactattccatctcatgcaaacatacaataaaaattgtcgtaaatgcat 192  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  39406964 atctagtggaaaactgatcaaggta-------acatgtttcattatgtcataactattccatctaatgcaaacatacaataaaaattgtcataaatgcat 39406872  T
Q  193 ttgttttca 201  Q
    |||||||||    
T  39406871 ttgttttca 39406863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 13046 - 12874
Alignment:
Q  1 aagttgaatt-cattactctgtattctgtagaaccaatactgcgcaccggcagatttcaaaaataagctgtccgcaaaactggtggatcttgtatctagt 99  Q
    |||||||||| ||| ||| |||||||||||  |||||||| |  |||| ||||| ||||||||   | |||| |||||||||  | |||||  ||||||     
T  13046 aagttgaatttcatcactttgtattctgtatgaccaataccggccacctgcagacttcaaaaagttgttgtcagcaaaactgaagtatcttacatctagc 12947  T
Q  100 ggaaaactgatcaaggtatattacaacatgtttcattatgtcataactattccatctcatgcaaacatacaat 172  Q
    |||||| |||| |||||||||| ||||||||||||||||||| | |||  ||||||| |||||||||||||||    
T  12946 ggaaaattgattaaggtatattgcaacatgtttcattatgtctttactcatccatctaatgcaaacatacaat 12874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 24415 - 24367
Alignment:
Q  152 catctcatgcaaacatacaataaaaattgtcgtaaatgcatttgttttc 200  Q
    ||||| |||||| |||| |||||||||| || |||||||||||||||||    
T  24415 catctgatgcaatcatagaataaaaattatcataaatgcatttgttttc 24367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University