View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13042_low_26 (Length: 243)
Name: NF13042_low_26
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13042_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 34 - 228
Target Start/End: Complemental strand, 45233761 - 45233567
Alignment:
| Q |
34 |
acatggtcgtatatattaagggaggaaagtagtttatcatccattcaaccgtggttgagttgagaggactgaaccgtattctttctttggtctatttatt |
133 |
Q |
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| T |
45233761 |
acatggtcgtatatattaagggaggaaagtagtttatcatccattcaaccgtggttgagttgagaggactgaaccgtattctttctttggtctatttatt |
45233662 |
T |
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| Q |
134 |
gcaacattgataattagattgatggtacatggtgatatggaataaattagactaccataatataagaatgtcctaaaatgtcaacatgaaatttc |
228 |
Q |
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| T |
45233661 |
gcaacattgataattagattgatggtacatggtgaaatggaataaattagactaccataatataagaatgtcctaaaatgtcaacatgaaatttc |
45233567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 45240343 - 45240246
Alignment:
| Q |
34 |
acatggtcgtatatattaagggaggaaagtagtttatcatccattcaacc--gtggttgagttgagaggactgaaccgtattctttctttggtctatt |
129 |
Q |
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| T |
45240343 |
acatggtcgtatatattaagggaggaaagtagtatatcatccattaaaccgtgtggttgagttgaaaggactgaacggtattctttctctggtctatt |
45240246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 48053171 - 48053142
Alignment:
| Q |
5 |
cctaccaactaagctatgctcacggggata |
34 |
Q |
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| T |
48053171 |
cctaccaactaagctatgctcacggggata |
48053142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 49757325 - 49757357
Alignment:
| Q |
1 |
tattcctaccaactaagctatgctcacggggat |
33 |
Q |
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| T |
49757325 |
tattcctaccaactgagctatgctcacggggat |
49757357 |
T |
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