View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13042_low_27 (Length: 242)
Name: NF13042_low_27
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13042_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 44248608 - 44248385
Alignment:
| Q |
1 |
atatatttagatcaagtaaatcagatgtgggctggggatatagatcaaattgacttgattgtgttgtcatttggtcattggtttacggatgttccttcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44248608 |
atatatttagatcaagtaaatcagatgtgggctagggatatagatcaaattgactcgattgtgttgtcatttggtcattggtttacggatgttccttcaa |
44248509 |
T |
|
| Q |
101 |
tttactatgagggtggttcaattataggttgttttagatgtcatgaatttaaatttaattatactgatattggattttatgttccaatgagaaaggcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44248508 |
tttactatgagggtggttcaattataggttgttttagatgtcatgaatttaaatttaattatactgatattggattttatgttccaatgagaaaggcttt |
44248409 |
T |
|
| Q |
201 |
aaggactacccttaatagcataat |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
44248408 |
aaggactacccttaatagcataat |
44248385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 15283952 - 15284175
Alignment:
| Q |
1 |
atatatttagatcaagtaaatcagatgtgggctggggatatagatcaaattgacttgattgtgttgtcatttggtcattggtttacggatgttccttcaa |
100 |
Q |
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|||||||| ||||| |||||| | |||||||| ||||||| ||| |||| ||||||||||| ||||||||||||||||||||| ||| ||||||||| |
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| T |
15283952 |
atatatttggatcatgtaaatgaaatgtgggcaagggatatggataaaatggacttgattgttttgtcatttggtcattggtttttggacattccttcaa |
15284051 |
T |
|
| Q |
101 |
tttactatgagggtggttcaattataggttgttttagatgtcatgaatttaaatttaattatactgatattggattttatgttccaatgagaaaggcttt |
200 |
Q |
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| T |
15284052 |
tttactatgaaggtgattcagttataggttgttttagatgtcaagaatttaaatttaattatagtgatattggattttatattccaatgagaaaggcttt |
15284151 |
T |
|
| Q |
201 |
aaggactacccttaatagcataat |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
15284152 |
aaggactacccttaatagcataat |
15284175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 15265631 - 15265597
Alignment:
| Q |
190 |
agaaaggctttaaggactacccttaatagcataat |
224 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
15265631 |
agaaaggctttaaggactacccttaatagcataat |
15265597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 15287813 - 15287743
Alignment:
| Q |
154 |
tttaattatactgatattggattttatgttccaatgagaaaggctttaaggactacccttaatagcataat |
224 |
Q |
| |
|
|||||| ||||| | |||| |||||||||||| | ||||||||||| ||||||||||||||||| ||||| |
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| T |
15287813 |
tttaatcatactcaaattgatttttatgttccattaagaaaggctttgaggactacccttaatagtataat |
15287743 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 15257141 - 15257072
Alignment:
| Q |
155 |
ttaattatactgatattggattttatgttccaatgagaaaggctttaaggactacccttaatagcataat |
224 |
Q |
| |
|
||||| ||||||| ||||| ||||||| | | |||||||||||||||| ||||| |||||||| ||||| |
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| T |
15257141 |
ttaatcatactgaaattgggttttatgatgtattgagaaaggctttaagaactactcttaatagtataat |
15257072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 15262614 - 15262683
Alignment:
| Q |
155 |
ttaattatactgatattggattttatgttccaatgagaaaggctttaaggactacccttaatagcataat |
224 |
Q |
| |
|
||||||| |||||||| || ||||| |||||| | |||||||||||||||||| |||||| ||||||| |
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| T |
15262614 |
ttaattacactgatatcggtttttacgttccattaagaaaggctttaaggacttgtcttaatggcataat |
15262683 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 51383143 - 51383360
Alignment:
| Q |
4 |
tatttagatcaagtaaatcagatgtgggctggggatatagatcaaattgacttgattgtgttgtcatttggtcattggtttacggatgttccttcaattt |
103 |
Q |
| |
|
||||| ||||| || ||| ||| ||||||| | |||||||||||||| |||||||||||||| ||||||||||||||||||| || |||||||||||| |
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| T |
51383143 |
tatttggatcatgtcaatgagaggtgggctagagatatagatcaaatggacttgattgtgttatcatttggtcattggtttatgg---ttccttcaattt |
51383239 |
T |
|
| Q |
104 |
actatgagggtggttcaattataggttgttttagatgtcatgaatttaaatttaattatactgatattggattttatgttccaatgagaaaggctttaag |
203 |
Q |
| |
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|||||||||||| || |||||||||||||||| ||||||||| |||||||||| ||||| ||||||||| |||||||| | ||||||||||||||||| |
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| T |
51383240 |
actatgagggtgagtctattataggttgttttaaatgtcatgatcttaaatttaactataccgatattggaatttatgttgcgatgagaaaggctttaag |
51383339 |
T |
|
| Q |
204 |
gactacccttaatagcataat |
224 |
Q |
| |
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|||||| |||||||| ||||| |
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| T |
51383340 |
gactactcttaatagtataat |
51383360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 36 - 224
Target Start/End: Complemental strand, 11807491 - 11807303
Alignment:
| Q |
36 |
ggatatagatcaaattgacttgattgtgttgtcatttggtcattggtttacggatgttccttcaatttactatgagggtggttcaattataggttgtttt |
135 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||||||||||| ||| |||||||| ||||||||||| || |||| |||||||||||| | |
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| T |
11807491 |
ggatatagatcaaatggacttgattatgttgtcatttggtcattggtttttggacattccttcagtttactatgagaatgattcagttataggttgttct |
11807392 |
T |
|
| Q |
136 |
agatgtcatgaatttaaatttaattatactgatattggattttatgttccaatgagaaaggctttaaggactacccttaatagcataat |
224 |
Q |
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| ||||||||| || |||| || |||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||| |
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| T |
11807391 |
atatgtcatgatttaaaatcgaaatataatgatattggattttatgttccaatgagaaaggctttaaggattgcccttaataccataat |
11807303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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