View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13042_low_3 (Length: 546)
Name: NF13042_low_3
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13042_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 7 - 531
Target Start/End: Original strand, 41405893 - 41406413
Alignment:
| Q |
7 |
ataggctatgaaggttttgagtgaataaattgatgtgtacacatccaggacttgttcattgtgtcatttaaacttgtgttatcatacttgtcaacttggt |
106 |
Q |
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| T |
41405893 |
ataggctatgaaggttttgagtgaataaattgatgtgtacacatccaggacttgttcattgtgtcatttaaacctgtgttatcatacttgtcaacttggt |
41405992 |
T |
|
| Q |
107 |
gattttgtaatactatttctaatgagaaactcagttgtggtacttcttgcaaaagttattacttgtattannnnnnnaatccatggtctaaagacatgct |
206 |
Q |
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| T |
41405993 |
gattttgtaatactatttctaatgagaaactcagttgtggtacttcttgcaaaagttattacttgtattatttttttaatccatagtctaaagacatgct |
41406092 |
T |
|
| Q |
207 |
agatccttagttgtcttggagttgtatatactgtggatgaccgtagcatttgtaatgtgcttatggggataattttgaattgatgcagacaaggttatga |
306 |
Q |
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| T |
41406093 |
agatccttagttgtcttggagttgtatatactgtggatgaccgtagcatttgtaatgatcttattgggataagtttgaattgatgcagacaaggttatga |
41406192 |
T |
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| Q |
307 |
cgttaatgaatgaaaacaaaatggtgatgttcttgtcacnnnnnnnnnnnggatcattattttagggagattgaaatgtttactcgtggtataaaatttg |
406 |
Q |
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| T |
41406193 |
cgttaatgaatgaaaacaaaatggtgatgttcttgtcac----aaaaaaaggatcattattttagggagattgaaatgtttactcgtggtataaaatttg |
41406288 |
T |
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| Q |
407 |
cttgctaatgctaaaccaggtgctgatggcgacctttaaataccattgtcaatttgcataatattatatcagaggttgcttgtaatttggaagaaaccac |
506 |
Q |
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| T |
41406289 |
cttgctaatgctaaaccaggtgctgatggcgacctttaaataccattgtcaattggcataatattatatcagaggttgcttgtaatttggaagaaaccac |
41406388 |
T |
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| Q |
507 |
tgtgattaattagactagtggtaag |
531 |
Q |
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| T |
41406389 |
tgtgattaattagactagtggtaag |
41406413 |
T |
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