View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13042_low_8 (Length: 338)
Name: NF13042_low_8
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13042_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 3762914 - 3763114
Alignment:
| Q |
1 |
tttcttcattttctgatgatgaagttgatgtgagggtgttgcaagaaagtagaaggaagaagaacaaagtgaggaaatgtttggaagacattatttggtg |
100 |
Q |
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| T |
3762914 |
tttcttcattttctgatgatgaagttgatgtgagggtgttgcaagaaagtagaaggaagaagaacaaagtgaggaaatgtttggaagacataatttggtg |
3763013 |
T |
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| Q |
101 |
gaaattgtgaaattgtgatgctaactctgttatctgcttaatgaagtgaagcatatataggaataggaatataaaatggagtggggtagggtcaattatt |
200 |
Q |
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| T |
3763014 |
gagtttgtgaaaatgtgatgctaactttgttatctgcttagtcaagtgaagcatatataggaataggaaaataaaatggagtgggatagggtcaattatt |
3763113 |
T |
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| Q |
201 |
a |
201 |
Q |
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| T |
3763114 |
a |
3763114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 3763683 - 3763747
Alignment:
| Q |
256 |
tatatcatttggttccattcaatggctgaatcagaatgggtgtgtggcgtggttgttggctcatg |
320 |
Q |
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| T |
3763683 |
tatatcatttggttccattcaatggctgaatcagaatgggtgtatggcgtggttgttggctcatg |
3763747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 3777015 - 3777077
Alignment:
| Q |
30 |
gtgagggtgttgcaagaaagtagaaggaagaagaacaaagtgaggaaatgtttggaagacatt |
92 |
Q |
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| T |
3777015 |
gtgagtgtgttacaagagataagaaggaagaagaacaaagtgaggaaatgtttggaagacatt |
3777077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 3746134 - 3746198
Alignment:
| Q |
17 |
tgatgaagttgatgtgagggtgttgcaagaaagtagaaggaagaagaacaaagtgaggaaatgtt |
81 |
Q |
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| T |
3746134 |
tgatgaagttgaagtgagggtgttgcaagagaagagaaggaagaagaaaaaagtgaggaagtgtt |
3746198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 3751953 - 3752015
Alignment:
| Q |
19 |
atgaagttgatgtgagggtgttgcaagaaagtagaaggaagaagaacaaagtgaggaaatgtt |
81 |
Q |
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| T |
3751953 |
atgatgttgaagtgagagtgttgcaagagaggagaaggaagaagaacaaagtgagaaaatgtt |
3752015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 3781331 - 3781393
Alignment:
| Q |
30 |
gtgagggtgttgcaagaaagtagaaggaagaagaacaaagtgaggaaatgtttggaagacatt |
92 |
Q |
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| T |
3781331 |
gtgagtgtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttgggaaggcatt |
3781393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 3755831 - 3755882
Alignment:
| Q |
30 |
gtgagggtgttgcaagaaagtagaaggaagaagaacaaagtgaggaaatgtt |
81 |
Q |
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| T |
3755831 |
gtgacggtgttgcaagaaagaagaaggaagaagaacaaagtgatgaagtgtt |
3755882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 320
Target Start/End: Original strand, 3775566 - 3775659
Alignment:
| Q |
234 |
tgagaaaaagcatatataggaata--tatcatttggttccat----tca-atggctgaatcagaatgggtgtgtggcgtggttgttggctcatg |
320 |
Q |
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| T |
3775566 |
tgagaaaaaacatagataggaaaacatatcatttggttccatggcatcacatggctgaatctgaataggtgtgtggcgtagttgttggctcatg |
3775659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 3763523 - 3763563
Alignment:
| Q |
196 |
ttattatggatcaaaaatataaaaagagaactggtcattga |
236 |
Q |
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|||||||||||||||||||||||||||||| || ||||||| |
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| T |
3763523 |
ttattatggatcaaaaatataaaaagagaagtgatcattga |
3763563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 3767353 - 3767414
Alignment:
| Q |
36 |
gtgttgcaagaaagtagaaggaagaagaacaaag---tgaggaaatgtttggaagacattat |
94 |
Q |
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| T |
3767353 |
gtgttgcaagatatgagaaggaagaagaacaaagtgatgaggaaatgtttggaaggcattat |
3767414 |
T |
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