View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13042_low_9 (Length: 318)
Name: NF13042_low_9
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13042_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 6e-68; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 160 - 302
Target Start/End: Original strand, 14518162 - 14518304
Alignment:
| Q |
160 |
ggaaactactttgcgaatataaagatacatacactcatcttttccattctttcgaaaaatcccattttggtcttagtttttgttcctttgttgcagtgcg |
259 |
Q |
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| T |
14518162 |
ggaaactactttgcgaatataaagatacatacactcatcttttccattctttcgaagaatcccattttggtcttagtttttgttcctttgttgcagtgcg |
14518261 |
T |
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| Q |
260 |
ccaccaattcttgtctagagttcgattctgttctcctccttga |
302 |
Q |
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| T |
14518262 |
ccaccaactcttgtctagagttcgattctattctcctccttga |
14518304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 14518003 - 14518096
Alignment:
| Q |
1 |
ttacataaaatgatagaaacagacctttaagagaagaggaacccgacacagatcgtcttgcgcgttgtttgccctagagaggaatgtatgatgt |
94 |
Q |
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| T |
14518003 |
ttacataaaatgatagaaacaaacctttaagagaagaggaacccgacacagatcgtcttgcgcgttgttttccctggagaggaatgtatgatgt |
14518096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 193 - 301
Target Start/End: Original strand, 14535700 - 14535808
Alignment:
| Q |
193 |
ctcatcttttccattctttcgaaaaatcccattttggtcttagtttttgttcctttgttgcagtgcgccaccaattcttgtctagagttcgattctgttc |
292 |
Q |
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| T |
14535700 |
ctcaccttttccattctttcaaaaaatcccattttggtcttagtttttgttcctgtgtggcagtctgccaccaattcttgtccagatttcgattctattc |
14535799 |
T |
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| Q |
293 |
tcctccttg |
301 |
Q |
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| T |
14535800 |
tcctccttg |
14535808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 14535563 - 14535655
Alignment:
| Q |
2 |
tacataaaatgatagaaacagacctttaagagaagaggaacccgacacagatcgtcttgcgcgttgtttgccctagagaggaatgtatgatgt |
94 |
Q |
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| T |
14535563 |
tacatagaatgatagaaacaaaccttcaggagaagaggaacccaacacagatcgtttggcgcgttgttttccctgaagaggaatatatgatgt |
14535655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 14531085 - 14531148
Alignment:
| Q |
31 |
gagaagaggaacccgacacagatcgtcttgcgcgttgtttgccctagagaggaatgtatgatgt |
94 |
Q |
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| T |
14531085 |
gagaagaggaacccaacacagatcgtttggcgcgttgttttccctggagaggaatatatgatgt |
14531148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 301
Target Start/End: Complemental strand, 37338228 - 37338119
Alignment:
| Q |
192 |
actcatcttttccattctttcgaaaaatcccattttggtcttagtttttgttcctttgttgcagtgcgccaccaattcttgtctagagttcgattctgtt |
291 |
Q |
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| T |
37338228 |
actcaccttttgcattctttcgaagaatcccattttggttttagtttttgttcctttatggcagttcaccaccaattcctgtccagattgtgattctagt |
37338129 |
T |
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| Q |
292 |
ctcctccttg |
301 |
Q |
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| T |
37338128 |
ctcctccttg |
37338119 |
T |
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