View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13043_high_2 (Length: 575)
Name: NF13043_high_2
Description: NF13043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13043_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 7651022 - 7651325
Alignment:
| Q |
18 |
tttatgcatgcagaaatgtgttctcaaagtgaacatgcactgtgacggttgcaagaagaaagttaagaaaaccttgcagaagattgatggtatgaaaatc |
117 |
Q |
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| T |
7651022 |
tttatgcatgcagaaatgtgttctcaaagtgaacatgcactgtgacggttgcaagaagaaagttaagaaaaccttgcagaagattgatggtatgaaaatc |
7651121 |
T |
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| Q |
118 |
cttctattcactcttctgaattggccaac-nnnnnnnnnntctcttttcatcacgtttatactctnnnnnnnnctctttaatatcaagagaaaaatataa |
216 |
Q |
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| T |
7651122 |
cttctattcactcttctgaattggccaacaaaaaaaaaaatctcttttcatcacgtttatactctaaaaaaaactctttaatatcaagagaaaaatataa |
7651221 |
T |
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| Q |
217 |
aatatattattaccaccattgatttacatacatttgttttattatttttatagcccaagnnnnnnnntactcatgaaaagcttttattttttctctccca |
316 |
Q |
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| T |
7651222 |
aatatattattaccaccattgatttacatacatttgttttattatttttatagcccaag-aaaaaaatactcatgaaaagcttttattttttctctctca |
7651320 |
T |
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| Q |
317 |
ctctt |
321 |
Q |
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||||| |
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| T |
7651321 |
ctctt |
7651325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 309 - 434
Target Start/End: Original strand, 7651346 - 7651473
Alignment:
| Q |
309 |
ctctcccactcttaggaatatgtatttaccccat--ttcattcattttgatactcaatattattttaaaaattcttttattatatgaaagggaaaaataa |
406 |
Q |
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| T |
7651346 |
ctctctcactcttagaaatatgtatttaccccatatttcattcactttgatactcaatattattttaaaaattcttttattatatgaaagggaaaaataa |
7651445 |
T |
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| Q |
407 |
cacaaaactcataccaccattagatcca |
434 |
Q |
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| T |
7651446 |
cacaaaactcataccaccattagatcca |
7651473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 7656435 - 7656546
Alignment:
| Q |
22 |
tgcatgcagaaatgtgttctcaaagtgaacatgcactgtgacggttgcaagaagaaagttaagaaaaccttgcagaagattgatggtatgaaaatccttc |
121 |
Q |
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| T |
7656435 |
tgcatgcagaaaagtgttctcaaagtgaacatacactgtgacggttgcaagcagaaagttaagaaaatcttgcagaagattgatggtaagaaaatcctta |
7656534 |
T |
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| Q |
122 |
tattcactcttc |
133 |
Q |
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|||||||||||| |
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| T |
7656535 |
tattcactcttc |
7656546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 519 - 575
Target Start/End: Original strand, 7651570 - 7651626
Alignment:
| Q |
519 |
caggggcttatactattgagatagatattgaacaaggaaaggtgattgttgctggga |
575 |
Q |
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| T |
7651570 |
caggggtttatactattgagatagatattgaacaaggaaaggtgattgttgctggga |
7651626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 48539636 - 48539550
Alignment:
| Q |
25 |
atgcagaaatgtgttctcaaagtgaacatgcactgtgacggttgcaagaagaaagttaagaaaaccttgcagaagattgatggtatg |
111 |
Q |
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| T |
48539636 |
atgcagaaatctgttctaaaagtgaacatacactgtgatggatgtaaacataaagtaaagaaaatcttacagaaaattgatggtatg |
48539550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 48573891 - 48573805
Alignment:
| Q |
25 |
atgcagaaatgtgttctcaaagtgaacatgcactgtgacggttgcaagaagaaagttaagaaaaccttgcagaagattgatggtatg |
111 |
Q |
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| T |
48573891 |
atgcagaaatctgttctaaaagtgaacatacactgtgatggatgtaaacataaagtaaagaaaatcttacagaaaattgatggtatg |
48573805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 48895449 - 48895396
Alignment:
| Q |
34 |
tgtgttctcaaagtgaacatgcactgtgacggttgcaagaagaaagttaagaaa |
87 |
Q |
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| T |
48895449 |
tgtgttctcaaagtgaacattcactgtgatggttgtaagcagaaagtgaagaaa |
48895396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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