View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13043_high_3 (Length: 497)
Name: NF13043_high_3
Description: NF13043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13043_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 18 - 487
Target Start/End: Original strand, 41066290 - 41066759
Alignment:
| Q |
18 |
ccactgtcattgacaattcaggatgaacctccataaggatcttcaatatatctgcaccaaagcaaaaatatttcagataatgagattccctttaaaaatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066290 |
ccactgtcattgacaattcaggatgaacctccataaggatcttcaatatatctgcaccaaagcaaaaatatttcagataatgagattccctttaaaaatg |
41066389 |
T |
|
| Q |
118 |
agtaaataggcattttagtcattgaaattgtaatatctgttcaatttagtccttcaaatttactaaatagcaattaaacccttaacttaaaggttatcaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41066390 |
agtaaataggcattttagtcattgaaattgtaatatctgttcaatttagtccttcaaatttcctaaatagcaattaaacccttaacttaaaggttatcaa |
41066489 |
T |
|
| Q |
218 |
tcaattgcgtccatttatcaaaatacttgtttaataaacatctatcgaaaccaatgaaatacctaaatattaacttgagtattctcttgcaatatcaaga |
317 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41066490 |
tcaattgcgtccatttatcaaaatacttgtttaataaacatctatcgaaaccaatgaaatacctaaatattaacttgagtagtctcttgcaatatcaaga |
41066589 |
T |
|
| Q |
318 |
cgaatgttatcaaatagcggccattgcaattagcaacattaaaatgctatagcgttgcagtatatgaacatattgttattgttccatgatacactaatta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066590 |
cgaatgttatcaaatagcggccattgcaattagcaacactaaaatgctatagcgttgcagtatatgaacatattgttattgttccatgatacactaatta |
41066689 |
T |
|
| Q |
418 |
gtacatattgctgtcaaatagtggctagcgtagcagaacttgaaccaactactatttttcgcgatctgtg |
487 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41066690 |
gtacacattgctgtcaaatagtggctagcgtagcagaacttgaaccaactactgtttttcgcgatctgtg |
41066759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 293
Target Start/End: Original strand, 14013841 - 14013977
Alignment:
| Q |
158 |
tcaatttagtccttcaaatttactaaatagc-aattaaacccttaacttaaaggttatcaatcaattgcgtccatttatcaaaatacttgtttaataaac |
256 |
Q |
| |
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|||||||||||| ||||||||| ||||||| || ||| ||||||| |||||| | ||||||||| |||| | |||||||||| || |||| ||||| |
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| T |
14013841 |
tcaatttagtccctcaaatttatgaaatagcaaaataatcccttaaattaaagaacaccaatcaatttagtccctctatcaaaatatttctttagtaaac |
14013940 |
T |
|
| Q |
257 |
atctatcgaaaccaatgaaatacctaaatattaactt |
293 |
Q |
| |
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||| ||| ||||| |||||| ||||| ||||| |||| |
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| T |
14013941 |
atccatcaaaaccgatgaaagacctacatattgactt |
14013977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 31957895 - 31957824
Alignment:
| Q |
116 |
tgagtaaataggcattttagtcattgaaattgtaatatctgttcaatttagtccttcaaatttactaaatagc |
188 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||||||| || | |||||||||||| |||| ||||| ||||||| |
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| T |
31957895 |
tgagtaaataagcatttttgtccttgaaattgtaagatttagtcaatttagtcc-tcaattttacaaaatagc |
31957824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 34911739 - 34911778
Alignment:
| Q |
111 |
aaaaatgagtaaataggcattttagtcattgaaattgtaa |
150 |
Q |
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| T |
34911739 |
aaaaatgagtaaataggcattttagtccgtgaaattgtaa |
34911778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 438
Target Start/End: Original strand, 24942496 - 24942555
Alignment:
| Q |
379 |
atatgaacatattgttattgttccatgatacactaattagtacatattgctgtcaaatag |
438 |
Q |
| |
|
||||||||| || | |||||||||||||||| |||||||||||| | || |||||||||| |
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|
| T |
24942496 |
atatgaacagatcgctattgttccatgatacgctaattagtacaaaatgttgtcaaatag |
24942555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 444
Target Start/End: Complemental strand, 38622955 - 38622874
Alignment:
| Q |
363 |
gctatagcgttgcagtatatgaacatattgttattgttccatgatacactaattagtacatattgctgtcaaatagtggcta |
444 |
Q |
| |
|
|||||||||| |||| || |||| | || | |||||||||||||||||||| |||| ||| | || |||||||||| ||||| |
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| T |
38622955 |
gctatagcgtagcagaatttgaataaatcgatattgttccatgatacactatttagcacaaaatgttgtcaaatagcggcta |
38622874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 485
Target Start/End: Original strand, 29505241 - 29505281
Alignment:
| Q |
445 |
gcgtagcagaacttgaaccaactactatttttcgcgatctg |
485 |
Q |
| |
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| T |
29505241 |
gcgtatcagaatttgagccaactactatttttcgcgatctg |
29505281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 150
Target Start/End: Original strand, 5539955 - 5539988
Alignment:
| Q |
117 |
gagtaaataggcattttagtcattgaaattgtaa |
150 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
5539955 |
gagtaaatagacattttagtcattgaaattgtaa |
5539988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 444
Target Start/End: Original strand, 4787917 - 4787978
Alignment:
| Q |
383 |
gaacatattgttattgttccatgatacactaattagtacatattgctgtcaaatagtggcta |
444 |
Q |
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|||||||| |||||||| ||||||||||| |||||||| | || |||||||||||||||| |
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| T |
4787917 |
gaacatatcgttattgtctaatgatacactatttagtacaaaatgttgtcaaatagtggcta |
4787978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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