View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13043_high_8 (Length: 339)
Name: NF13043_high_8
Description: NF13043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13043_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 43102949 - 43102625
Alignment:
| Q |
1 |
tcgttccatggtgtccatgatgtttttaggctacctaggagaacttgaacttgcagccggttcactcgccatcgccttcgccaacatcaccggctactca |
100 |
Q |
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| T |
43102949 |
tcgttccatggtgtccatgatgtttttaggctacctaggagaacttgaacttgcagccggttcactcgccatcgccttcgccaacatcaccggctactca |
43102850 |
T |
|
| Q |
101 |
gttctctccggtctctctctcggaatggaacctctttgttcacaagccttcggagcaaaccgtcctaaactcctatccttaacacttcaacgttgcatcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43102849 |
gttctctccggtctctctctcggaatggaacctctctgttcacaagccttcggagcaaaccgtcctaaactcctatccttaacacttcaacgttgcatcc |
43102750 |
T |
|
| Q |
201 |
tcttcctattactatgttccattcccatttccttcatgtggcttaacatgtcacaaatcctcatttggttgcaccagaacccaaagatcacagccatggc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43102749 |
tcttcctattactatgttccattcccatttccttcatgtggcttaacatgtcacaaatcctcatttggttgcaccagaacccaaagatcacagccatggc |
43102650 |
T |
|
| Q |
301 |
tcacacatatctaatattctctctc |
325 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
43102649 |
tcacacatatctaatattctctctc |
43102625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 33948604 - 33948749
Alignment:
| Q |
47 |
gaacttgcagccggttcactcgccatcgccttcgccaacatcaccggctactcagttctctccggtctctctctcggaatggaacctctttgttcacaag |
146 |
Q |
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||||||||| | |||||| | ||||| || || || ||||| ||||| || |||||||| || ||| | ||| | || ||||||||||||||||| |||| |
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| T |
33948604 |
gaacttgcatcaggttcattagccatagcttttgcaaacataaccggttattcagttctttctggtttatctttaggtatggaacctctttgttctcaag |
33948703 |
T |
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| Q |
147 |
ccttcggagcaaaccgtcctaaactcctatccttaacacttcaacg |
192 |
Q |
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|||| || || |||||||| ||||| ||||| |||||||||||||| |
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| T |
33948704 |
cctttggtgctaaccgtccaaaacttctatcattaacacttcaacg |
33948749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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