View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13043_high_9 (Length: 324)
Name: NF13043_high_9
Description: NF13043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13043_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 204 - 306
Target Start/End: Original strand, 3811905 - 3812007
Alignment:
| Q |
204 |
tgattatggagctgacatgaacttatttgggatttagtggtgtaatgaaatcagaaaatgcaaaggtgaatacccaacatccatgggtagttattttgat |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3811905 |
tgattatggagctgacatgaacttatttgggatttagtggtgtaatgaaatcagaaaatgcaaaggtgagtacccaacatccatgggtagttattttgat |
3812004 |
T |
|
| Q |
304 |
tat |
306 |
Q |
| |
|
||| |
|
|
| T |
3812005 |
tat |
3812007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 3811478 - 3811584
Alignment:
| Q |
10 |
attatactgaaaatggcttacgagtttgacatggacttttccgaaataagttaaaacgagattttaagttggttataaatgattccagagttgattatgg |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3811478 |
attatgctgaaaatggcttacgagtttgacatggactttttcgaaataagctaaaacgagattttaagttggttataaatgattccagagttgattatgg |
3811577 |
T |
|
| Q |
110 |
atgccca |
116 |
Q |
| |
|
||||||| |
|
|
| T |
3811578 |
atgccca |
3811584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 24627694 - 24627558
Alignment:
| Q |
26 |
cttacgagtttgacatggacttttccgaaataagttaaaacgagattttaagttggttataaatgattccagagttgattatggatgcccacatgattga |
125 |
Q |
| |
|
|||||| |||||||||||| |||||| ||||| ||||||| || |||||| ||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
24627694 |
cttacgggtttgacatggatttttccaggataagctaaaacgtgaatttaagatggttataaatgattccaggattgattatggatgcccacatggttga |
24627595 |
T |
|
| Q |
126 |
tcaagagtttggttgaattcaagacgtaaaagttaga |
162 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
24627594 |
gcaagagtttggttgaaatcaggacgtaaaagttaga |
24627558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 20809740 - 20809850
Alignment:
| Q |
13 |
atactgaaaatggcttacgagtttgacatggacttttccgaaataagttaaaacgagattttaagttggttataaatgattccagagttgattatggatg |
112 |
Q |
| |
|
|||||| |||||||| ||| |||||| |||| |||||||||||||| || || | || || || |||||||||||||||| ||| ||| |||| ||||| |
|
|
| T |
20809740 |
atactgcaaatggct-acgggtttgatgtggatttttccgaaataagctacaatgtgaattcaaattggttataaatgatttcag-gttaattacggatg |
20809837 |
T |
|
| Q |
113 |
cccacatgattga |
125 |
Q |
| |
|
||| |||| |||| |
|
|
| T |
20809838 |
ccctcatggttga |
20809850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University