View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13043_low_1 (Length: 765)
Name: NF13043_low_1
Description: NF13043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13043_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 326 - 756
Target Start/End: Original strand, 3731194 - 3731621
Alignment:
| Q |
326 |
atccgtacttgaatttttgctactgtgcgttcacttaggaatgccttcactgctttccacaacatcttaaagccagaaccagcattaataataaagagtt |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731194 |
atccgtacttgaatttttgctactgtgcgttcacttaggaatgccttcactgctttccacaacatcttaaagccagaaccagcattaataataaagagtt |
3731293 |
T |
|
| Q |
426 |
tatttagagtctgcnnnnnnnnnnnntagatgaactttaatcaacttcaatagggaaactactacaataaaaatttaagaattcgtctttaactttttat |
525 |
Q |
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| T |
3731294 |
tatttagagtctgcaaaaaaaaaaa-tagatgaactttaatcaacttcaatagggaaactactacaataaaaatttaagaattcgtctttaactttttat |
3731392 |
T |
|
| Q |
526 |
gttattattgttgtaaactttgaaaactatataaccattgtcatattatcaaataatctaacttaatcacacattaaaatagcagtcatgtcacatatat |
625 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
3731393 |
gttattattgttgtaaactttgaaaactatataaccattgtcatattatcaaataatctaacttaatcacacatt--aatagcattcatgtcacatatat |
3731490 |
T |
|
| Q |
626 |
ccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatgaagatgtaccttgcaggctt |
725 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731491 |
ccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatgaagatgtaccttgcaggctt |
3731590 |
T |
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| Q |
726 |
tgagaaattagacattccctagaagaataat |
756 |
Q |
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| T |
3731591 |
tgagaaattagacattccctagaagaataat |
3731621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 3730928 - 3731196
Alignment:
| Q |
19 |
taaacgcagaacatcacaaatagacctaattgtaagtagtaacatattcatcnnnnnnnggcttcaacttcctaagttgcctgttgctacagaaaaaatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3730928 |
taaacgcagaacatcacaaatagacctaattgtaagtagtaacatattcatcaaaaaaaggcttcaacttcctaagttgcctgttgctacagaaaaaatc |
3731027 |
T |
|
| Q |
119 |
atggcttaactatacaaaagtcgttttacctcggatcaatagcgtctagcaacacactgagataattagaacccaaaacctgaaaaaggaatgttggaga |
218 |
Q |
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| T |
3731028 |
atggcttaactatacaaaagtcgttttacctcggatcaatagcctctagcaacacactgagataattagaacccaaaacctgaaaaaggaatgttggaga |
3731127 |
T |
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| Q |
219 |
tttaacataaacacaaaactgtaaaatagaggttgatacaacaaaatatagtaatagttgtataaaatc |
287 |
Q |
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| T |
3731128 |
tttaacataaacacaaaactgtaagatagaggttgatacaacaaaatatagtaatagttgtataaaatc |
3731196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 5e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 621 - 756
Target Start/End: Original strand, 11683800 - 11683935
Alignment:
| Q |
621 |
tatatccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatgaagatgtaccttgca |
720 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11683800 |
tataaccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataattgctatcaatcttctgaatttccatgaagatttaccttgca |
11683899 |
T |
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| Q |
721 |
ggctttgagaaattagacattccctagaagaataat |
756 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
11683900 |
ggctctgagaaattagacattccctagaagaataat |
11683935 |
T |
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