View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13043_low_14 (Length: 264)

Name: NF13043_low_14
Description: NF13043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13043_low_14
NF13043_low_14
[»] chr5 (3 HSPs)
chr5 (9-264)||(13667745-13667996)
chr5 (225-264)||(974200-974239)
chr5 (227-264)||(3578001-3578038)
[»] scaffold0015 (1 HSPs)
scaffold0015 (225-264)||(50090-50129)
[»] chr8 (1 HSPs)
chr8 (225-264)||(9855681-9855720)
[»] chr7 (2 HSPs)
chr7 (225-264)||(44141409-44141448)
chr7 (225-258)||(21276644-21276677)
[»] chr6 (2 HSPs)
chr6 (225-264)||(6390287-6390326)
chr6 (215-264)||(5997567-5997616)
[»] chr4 (6 HSPs)
chr4 (225-264)||(32384278-32384317)
chr4 (226-264)||(5814149-5814187)
chr4 (225-258)||(10616580-10616613)
chr4 (227-264)||(42495932-42495969)
chr4 (228-264)||(8444660-8444696)
chr4 (228-264)||(47690665-47690701)
[»] chr3 (1 HSPs)
chr3 (225-264)||(19987835-19987874)
[»] chr2 (6 HSPs)
chr2 (225-264)||(3963399-3963438)
chr2 (225-264)||(18906924-18906963)
chr2 (225-264)||(39060406-39060445)
chr2 (215-264)||(7900250-7900299)
chr2 (228-264)||(28625466-28625502)
chr2 (228-264)||(32503982-32504018)
[»] chr1 (1 HSPs)
chr1 (228-264)||(1342807-1342843)


Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 13667996 - 13667745
Alignment:
Q  9 gataattctccaagtttggattagattcatatcaaccgtataattttaggttttggtttgtaggagacgaagatataaatgtaacgataaaaggtacaat 108  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  13667996 gataattctccaagtgtggattagattcatatcaaccgtataattttaagttttggtttgtctgagacgaagatataaatgtaacgataaaaggtacaat 13667897  T
Q  109 atcattgtctttagagatgttaaatgtattggtctagctagctcgatcagttcggattcatgtatacaaatgagttaaaccaacccgaaccatttattat 208  Q
    |||||||||||||||||||||||||||||||||||    ||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  13667896 atcattgtctttagagatgttaaatgtattggtct----agctcaatcagttcggattcatgtatataaatgagttaaaccaatccgaaccatttattat 13667801  T
Q  209 tgcgatatacatcatgggcttaaatatgtctttagtccctacactttcatcggatt 264  Q
    |||||||||||| ||||| ||||||||| ||||| |||||  ||||||||| ||||    
T  13667800 tgcgatatacattatgggtttaaatatgcctttaatccctgtactttcatcagatt 13667745  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 264
Target Start/End: Complemental strand, 974239 - 974200
Alignment:
Q  225 ggcttaaatatgtctttagtccctacactttcatcggatt 264  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  974239 ggcttaaatatgtctttagtccctgcactttcatcagatt 974200  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 264
Target Start/End: Original strand, 3578001 - 3578038
Alignment:
Q  227 cttaaatatgtctttagtccctacactttcatcggatt 264  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  3578001 cttaaatatgtctttagtccctgcactttcatcagatt 3578038  T

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Target: scaffold0015 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 264
Target Start/End: Complemental strand, 50129 - 50090
Alignment:
Q  225 ggcttaaatatgtctttagtccctacactttcatcggatt 264  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  50129 ggcttaaatatgtctttagtccctgcactttcatcagatt 50090  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 264
Target Start/End: Complemental strand, 9855720 - 9855681
Alignment:
Q  225 ggcttaaatatgtctttagtccctacactttcatcggatt 264  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  9855720 ggcttaaatatgtctttagtccctgcactttcatcagatt 9855681  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 264
Target Start/End: Original strand, 44141409 - 44141448
Alignment:
Q  225 ggcttaaatatgtctttagtccctacactttcatcggatt 264  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  44141409 ggcttaaatatgtctttagtccctgcactttcatcagatt 44141448  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 258
Target Start/End: Complemental strand, 21276677 - 21276644
Alignment:
Q  225 ggcttaaatatgtctttagtccctacactttcat 258  Q
    |||||||||||||||||||||||| |||||||||    
T  21276677 ggcttaaatatgtctttagtccctgcactttcat 21276644  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 264
Target Start/End: Complemental strand, 6390326 - 6390287
Alignment:
Q  225 ggcttaaatatgtctttagtccctacactttcatcggatt 264  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  6390326 ggcttaaatatgtctttagtccctgcactttcatcagatt 6390287  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 5997616 - 5997567
Alignment:
Q  215 atacatcatgggcttaaatatgtctttagtccctacactttcatcggatt 264  Q
    |||||| || |||||||||||| ||||||||||| |||||||||| ||||    
T  5997616 atacattataggcttaaatatgcctttagtccctgcactttcatcagatt 5997567  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 264
Target Start/End: Complemental strand, 32384317 - 32384278
Alignment:
Q  225 ggcttaaatatgtctttagtccctacactttcatcggatt 264  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  32384317 ggcttaaatatgtctttagtccctgcactttcatcagatt 32384278  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 5814187 - 5814149
Alignment:
Q  226 gcttaaatatgtctttagtccctacactttcatcggatt 264  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  5814187 gcttaaatatgtctttagtccctgcactttcatcagatt 5814149  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 258
Target Start/End: Complemental strand, 10616613 - 10616580
Alignment:
Q  225 ggcttaaatatgtctttagtccctacactttcat 258  Q
    |||||||||||||||||||||||| |||||||||    
T  10616613 ggcttaaatatgtctttagtccctgcactttcat 10616580  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 264
Target Start/End: Original strand, 42495932 - 42495969
Alignment:
Q  227 cttaaatatgtctttagtccctacactttcatcggatt 264  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  42495932 cttaaatatgtctttagtccctgcactttcatcagatt 42495969  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 8444660 - 8444696
Alignment:
Q  228 ttaaatatgtctttagtccctacactttcatcggatt 264  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  8444660 ttaaatatgtctttagtccttacactttcatcagatt 8444696  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 47690701 - 47690665
Alignment:
Q  228 ttaaatatgtctttagtccctacactttcatcggatt 264  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  47690701 ttaaatatgtctttagtccctgcactttcatcagatt 47690665  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 264
Target Start/End: Original strand, 19987835 - 19987874
Alignment:
Q  225 ggcttaaatatgtctttagtccctacactttcatcggatt 264  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  19987835 ggcttaaatatgtctttagtccctgcactttcatcagatt 19987874  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 264
Target Start/End: Complemental strand, 3963438 - 3963399
Alignment:
Q  225 ggcttaaatatgtctttagtccctacactttcatcggatt 264  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  3963438 ggcttaaatatgtctttagtccctgcactttcatcagatt 3963399  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 264
Target Start/End: Original strand, 18906924 - 18906963
Alignment:
Q  225 ggcttaaatatgtctttagtccctacactttcatcggatt 264  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  18906924 ggcttaaatatgtctttagtccctgcactttcatcagatt 18906963  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 264
Target Start/End: Original strand, 39060406 - 39060445
Alignment:
Q  225 ggcttaaatatgtctttagtccctacactttcatcggatt 264  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  39060406 ggcttaaatatgtctttagtccctgcactttcatcagatt 39060445  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 7900250 - 7900299
Alignment:
Q  215 atacatcatgggcttaaatatgtctttagtccctacactttcatcggatt 264  Q
    |||||| || ||||||||||| |||||||||||| |||||||||| ||||    
T  7900250 atacattataggcttaaatatatctttagtccctgcactttcatcagatt 7900299  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 28625466 - 28625502
Alignment:
Q  228 ttaaatatgtctttagtccctacactttcatcggatt 264  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  28625466 ttaaatatgtctttactccctgcactttcatcggatt 28625502  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 32503982 - 32504018
Alignment:
Q  228 ttaaatatgtctttagtccctacactttcatcggatt 264  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  32503982 ttaaatatgtctttagtccttacactttcatcagatt 32504018  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 1342843 - 1342807
Alignment:
Q  228 ttaaatatgtctttagtccctacactttcatcggatt 264  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  1342843 ttaaatatgtctttagtccttacactttcatcagatt 1342807  T

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