View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13043_low_2 (Length: 721)
Name: NF13043_low_2
Description: NF13043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13043_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 679; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 19 - 704
Target Start/End: Complemental strand, 38487254 - 38486568
Alignment:
| Q |
19 |
cgtgcaggatagtccgcccaaagaaatggctacgtgtacccatggagaatgtgtagaaaactgatgaaagttggagctgcattgtcaaaaaatcc-agac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38487254 |
cgtgcaggatagtccgcccaaagaaatggctacgtgtacccatggagaatgtgtagaaaactgatgaaagttggagctgcattgtcaaaaaatcccagac |
38487155 |
T |
|
| Q |
118 |
agcttgaaggaatccatgttcaagggaattctccacaatcattggaagggcagtgaaaagtccaatttggactaggaactgctgattcattattatacca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38487154 |
agcttgaaggaatccatgttcaagggaattctccacaatcattggaagggcagtgaaaagtccaatttggactaggaactgctgattcattattatacca |
38487055 |
T |
|
| Q |
218 |
agtgctttatttttattgctgttattttccatagcagcttcaataccactaagcgcaagcaataatcgaccccacagaaatgcataaacggtaagaacaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38487054 |
agtgctttatttttattgctgttattttccatagcagcttcaataccactaagcgcaagcaataatcgaccccacagaaatgcataaacggtaagaacaa |
38486955 |
T |
|
| Q |
318 |
ccatcattgtgttgaaaaagaatcccactgtggtgtagaagaatgacagcatcctgaagaaatccagtctatgacccaatctatatacatctcggctcaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486954 |
ccatcattgtgttgaaaaagaatcccactgtggtgtagaagaatgacagcatcctgaagaaatccagtctatgacccaatctatatacatctcggctcaa |
38486855 |
T |
|
| Q |
418 |
tacttgctccccatttccactggcaaccttggcttcaaacattgatatttgattcaacccaacatcccttccttttccaacttgaatgtattcatgatgt |
517 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38486854 |
tacttgctccccatttccactggcaaccttggcttcaaacattgatatttgattcaacccaacatcccttccttttccaacttgaatgtattcatgatgt |
38486755 |
T |
|
| Q |
518 |
gtgatattacctccacgaatagtacagttaaaaccggcaaaaatgtcctcgcttatgttgatcactctagaagctttactgataccacctctagttataa |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38486754 |
gtgatattacctccacgaatagtacagttaaaaccggcaaaaatgtcctcgcttatgttgatcactctagaagctttactgataccacctctagttataa |
38486655 |
T |
|
| Q |
618 |
accaaaacctgtcaaacacatcaggatggccataatgcattcgaattttcaaagggtttgccaaaaccctctgccctaaggtgacaa |
704 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486654 |
accaaaacctgtcaaacacatcaggatggccataatgcattcgaattttcaaagggtttgccaaaaccctctgccctaaggtgacaa |
38486568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 404 - 680
Target Start/End: Complemental strand, 3686099 - 3685823
Alignment:
| Q |
404 |
acatctcggctcaatacttgctccccatttccactggcaaccttggcttcaaacattgatatttgattcaacccaacatcccttccttttccaacttgaa |
503 |
Q |
| |
|
||||||| |||||| || ||||| ||||| ||||| || |||||||| |||||||| ||||| |||||||| |||||||| |||||||| || || || | |
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|
| T |
3686099 |
acatctctgctcaacacctgctcgccattgccacttgcgaccttggcctcaaacatggatatctgattcaagccaacatctcttcctttacctacctgta |
3686000 |
T |
|
| Q |
504 |
tgtattcatgatgtgtgatattacctccacgaatagtacagttaaaaccggcaaaaatgtcctcgcttatgttgatcactctagaagctttactgatacc |
603 |
Q |
| |
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| |||||||||||||| | ||| || || || | ||||| || ||||| |||||||| || || || || |||||||||||||| || || |||| || |
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| T |
3685999 |
tatattcatgatgtgtcacattgccacctcgcaatgtacaattgaaaccagcaaaaatatcttcactaatattgatcactctagatgccttgctgactcc |
3685900 |
T |
|
| Q |
604 |
acctctagttataaaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttcaaagggtttgcca |
680 |
Q |
| |
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||| ||| | |||||||| |||||||||||||| ||||| || || ||||| || | ||||||||||||||||| |
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|
| T |
3685899 |
acccctacacaagaaccaaaatctgtcaaacacatccggatgaccgtagtgcatccgtactttcaaagggtttgcca |
3685823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 422 - 534
Target Start/End: Original strand, 26002243 - 26002355
Alignment:
| Q |
422 |
tgctccccatttccactggcaaccttggcttcaaacattgatatttgattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtga |
521 |
Q |
| |
|
||||| ||||| ||| | |||| ||| ||||||||||||||||| || || | || || ||||||||||| |||||||| ||||| |||||||| |||| |
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|
| T |
26002243 |
tgctcaccattcccattagcaatctttgcttcaaacattgatatctggttaagaccgacgtcccttcctttaccaacttgtatgtactcatgatgagtga |
26002342 |
T |
|
| Q |
522 |
tattacctccacg |
534 |
Q |
| |
|
||| ||| |||| |
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|
| T |
26002343 |
catttccttcacg |
26002355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 19 - 702
Target Start/End: Complemental strand, 30121653 - 30120969
Alignment:
| Q |
19 |
cgtgcaggatagtccgcccaaagaaatggctacgtgtacccatggagaatgtgtagaaaactgatgaaagttggagctgcattgtcaaaaaatcc-agac |
117 |
Q |
| |
|
||||||| |||||||| ||||| ||||| || || || ||||||||||| ||||||||||| |||||||| || || ||||| || || || ||| ||| |
|
|
| T |
30121653 |
cgtgcagaatagtccggccaaaaaaatgactgcgagtgcccatggagaaggtgtagaaaacggatgaaagctgaagttgcatcgttaagaagtcccagat |
30121554 |
T |
|
| Q |
118 |
agcttgaaggaatccatgttcaagggaattctccacaatcattggaagggcagtgaaaagtccaatttggactaggaactgctgattcattattatacca |
217 |
Q |
| |
|
|||||| ||||| || || |||||||||||||| |||||||| |||||||| ||||||||||||| ||||| | ||||||||||| | || |||| |
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|
| T |
30121553 |
agcttggaggaacccgtgctcaagggaattctctacaatcatcggaagggcggtgaaaagtccaagttggatgataaactgctgatttaagatggcacca |
30121454 |
T |
|
| Q |
218 |
agtgctttatttttattgctgttattttccatagcagcttcaataccactaagcgcaagcaataatcgaccccacagaaatgcataaacggtaagaacaa |
317 |
Q |
| |
|
|||||||| || |||||||||||| ||||||| | |||| ||||||||| || || ||| ||||| ||| ||||| ||||| || || ||||| | |
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|
| T |
30121453 |
agtgctttgttgttattgctgttactttccattgatttctcaacaccactaagggcgagatatagtcgactccatagaaaggcatatactgtcagaacca |
30121354 |
T |
|
| Q |
318 |
ccatcattgtgttgaaaaagaatcccactgtggtgtagaagaatgacagcatcctgaagaaatccagtctatgacccaatctatatacatctcggctcaa |
417 |
Q |
| |
|
|||||||||||||||| ||||| ||||| || |||||||||||||| ||||| | ||| ||||| || ||||||||||| || || ||||||| ||||| |
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|
| T |
30121353 |
ccatcattgtgttgaagaagaaccccacagtagtgtagaagaatgaaagcattcggaaaaaatcaagcctatgacccaacctgtacacatctctgctcag |
30121254 |
T |
|
| Q |
418 |
tacttgctccccatttccactggcaaccttggcttcaaacattgatatttgattcaacccaacatcccttccttttccaacttgaatgtattcatgatgt |
517 |
Q |
| |
|
| ||| ||||| || ||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||| || |
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|
| T |
30121253 |
gatttgttccccgttgccactagcaaccttggcttcaaacattgatacttgattcagaccaacatcccttccctttccaacctgaatgtattcatggtga |
30121154 |
T |
|
| Q |
518 |
gtgatattacctccacgaatagtacagttaaaaccggcaaaaatgtcctcgcttatgttgatcactctagaagctttactgataccacctctagttataa |
617 |
Q |
| |
|
|||| |||||||||||||| |||||| || || || ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| | |
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|
| T |
30121153 |
gtgacattacctccacgaagagtacaattgaacccagcaaatatgtcctcgcttatgttgatcactctggaagctttgctgataccacctcgagttaaga |
30121054 |
T |
|
| Q |
618 |
accaaaacctgtcaaacacatcaggatggccataatgcattcgaattttcaaagggtttgccaaaaccctctgccctaaggtgac |
702 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
30121053 |
accaaaacctgtcaaacacatctggatgaccataatgcattcgaactttcaaaggatttgccaaaaccctctgtcctagggtgac |
30120969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 467 - 525
Target Start/End: Original strand, 43955842 - 43955900
Alignment:
| Q |
467 |
tgattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatatt |
525 |
Q |
| |
|
||||||| ||||||||| || || ||||||||||| |||||||||||||| || ||||| |
|
|
| T |
43955842 |
tgattcatcccaacatctctaccctttccaacttggatgtattcatgatgagtaatatt |
43955900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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