View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13043_low_3 (Length: 591)
Name: NF13043_low_3
Description: NF13043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13043_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 10 - 449
Target Start/End: Complemental strand, 22016815 - 22016398
Alignment:
| Q |
10 |
catcatcagcattattttcattattatctgtcccttcattacgttcagtttctaccatggatagatcatcttttgcttgctcttcacaataaggttgaat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22016815 |
catcatcagcattattttcattattatctttcccttcattacgttcagtttctaccatggatagatcatcttttgcttgctcttcacaataaggttgaat |
22016716 |
T |
|
| Q |
110 |
ttcatccagacaattcatctgaggaggcttcggtaaatagcgtagaacacaaaaatcgatcaggaattgcatagtaagagataatttcaaattcactatg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22016715 |
ttcatccagacaattcatctgaggaggcttcggtaaatagcgtagaacacaaaaatcgatcaggaattgcatagtaagagataatttcaaattcactatg |
22016616 |
T |
|
| Q |
210 |
ctaagtcatcacaaagcagcacttacaaaagtaaccttatagcaaatccaaagttagaagtgtagcaaagtggctatgttacactccttgattaataaac |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22016615 |
ctaagtcatcacaaagcagcacttacaaaagtaaccttatagcaaatccaaagttagaagtgtagcaaagtggctatgttacactccttgattaataaac |
22016516 |
T |
|
| Q |
310 |
acaaatgtgcagaatggcaaaattattatagcactattaaagccattaagggagactattaaagccatatttctagaggatgtgaaactaaagtcaaaac |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
22016515 |
acaaatgtgcagaatggcaaaattattatagcactattaaagcca----------------------tatttctagatgatgtgaaactaaagtcaaaac |
22016438 |
T |
|
| Q |
410 |
acactcttcacaccagcacaacaaagatactagaggaagc |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22016437 |
acactcttcacaccagcacaacaaagatactagaggaagc |
22016398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 447 - 576
Target Start/End: Complemental strand, 22016363 - 22016230
Alignment:
| Q |
447 |
agctagaggtggattgaaactcaggcagctttt-ccaacacggtatgtatatgctaggagggaaaacaactgaacaacaacaaaaccttttcttactagt |
545 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22016363 |
agctagaggtggattgaaactcaggcagctttttccaacacagtacgtacatgctaggagggaaaacaactgaacaacaacaaaaccttttctcactagt |
22016264 |
T |
|
| Q |
546 |
gggcttaactaca---atcaaaacctgtcataaa |
576 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| |
|
|
| T |
22016263 |
cggcttaactacagccatcaaaacctgtcttaaa |
22016230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 22016864 - 22016830
Alignment:
| Q |
12 |
tcatcagcattattttcattattatctgtcccttc |
46 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
22016864 |
tcatcagcattattttcattattatctgtcccttc |
22016830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University