View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13043_low_6 (Length: 410)

Name: NF13043_low_6
Description: NF13043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13043_low_6
NF13043_low_6
[»] chr5 (4 HSPs)
chr5 (16-166)||(5711972-5712122)
chr5 (179-373)||(5712163-5712354)
chr5 (289-373)||(33403238-33403322)
chr5 (289-373)||(36768761-36768845)
[»] chr2 (5 HSPs)
chr2 (289-373)||(31922011-31922095)
chr2 (296-373)||(25898514-25898591)
chr2 (289-352)||(4828282-4828345)
chr2 (289-352)||(42847100-42847163)
chr2 (298-352)||(16964869-16964923)
[»] chr7 (2 HSPs)
chr7 (289-373)||(22337755-22337839)
chr7 (296-373)||(22619575-22619652)
[»] chr4 (3 HSPs)
chr4 (289-373)||(10441188-10441272)
chr4 (296-373)||(28690067-28690144)
chr4 (298-351)||(41555515-41555568)
[»] chr3 (1 HSPs)
chr3 (297-373)||(30459858-30459934)
[»] chr8 (2 HSPs)
chr8 (296-373)||(11146821-11146897)
chr8 (298-352)||(13243739-13243793)


Alignment Details
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 5711972 - 5712122
Alignment:
Q  16 ataatacttgtcagtgcttttgctttttaagtattagtctcatgaatatatttaagagccatatgagggccgtataatttaccgctattacgtgcaacaa 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  5711972 ataatacttgttagtgcttttgctttttaagtattagtctcatgaatatatttaaaagccatatgagggccatataatttaccgctattacgtgcaacaa 5712071  T
Q  116 tcacgttagaaagtttaggctagcacattgtgactcactacgtaattcctc 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5712072 tcacgttagaaagtttaggctagcacattgtgactcactacgtaattcctc 5712122  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 179 - 373
Target Start/End: Original strand, 5712163 - 5712354
Alignment:
Q  179 taaagtgaataggcggtgaataagaaaactattaaaacattgatcttatttatnnnnnnntattactcccccgcccatgaatagaataaatgatctattt 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||| |||  |||||||      | ||| ||||||    
T  5712163 taaagtgaataggcggtgaataagaaaactattaaaacattgatcttatttataaaaaaatattactcctccgttcatgaatt-----agtga-ctattt 5712256  T
Q  279 gtnnnnnnnn---ttgtcctaaaataattgaccttttcaaattttaaagcaaaatttgacaatttcaccccttataattgcttgtatggtctccatgt 373  Q
    ||           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5712257 gtaaaaaaaaaaattgtcctaaaataattgaccttctcaaattttaaagcaaaatttgacaatttcaccctttataattgcttgtatggtctccatgt 5712354  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 33403238 - 33403322
Alignment:
Q  289 ttgtcctaaaataattgaccttttcaaattttaaagcaaaatttgacaatttcaccccttataattgcttgtatggtctccatgt 373  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33403238 ttgtcctaaaatacttgaccttctcaaattttaaagcaaaatttgacaattttaccccttataattgcttgtatggtctccatgt 33403322  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 36768845 - 36768761
Alignment:
Q  289 ttgtcctaaaataattgaccttttcaaattttaaagcaaaatttgacaatttcaccccttataattgcttgtatggtctccatgt 373  Q
    |||||| |||||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36768845 ttgtcccaaaatactcgaccttatcaaattttaaagcaaaatttgacaattttaccccttataattgcttgtatggtctccatgt 36768761  T

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Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 31922095 - 31922011
Alignment:
Q  289 ttgtcctaaaataattgaccttttcaaattttaaagcaaaatttgacaatttcaccccttataattgcttgtatggtctccatgt 373  Q
    |||||| |||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31922095 ttgtcccaaaatacttgaccttctcaaattttaaagcaaaatttgacaattttaccccttataattgcttgtatggtctccatgt 31922011  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 25898514 - 25898591
Alignment:
Q  296 aaaataattgaccttttcaaattttaaagcaaaatttgacaatttcaccccttataattgcttgtatggtctccatgt 373  Q
    |||||| | |||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||    
T  25898514 aaaatactcgaccttctcaaattttaaagcaaaatttgataattttactccttataattgcttgtatggtctccatgt 25898591  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 352
Target Start/End: Complemental strand, 4828345 - 4828282
Alignment:
Q  289 ttgtcctaaaataattgaccttttcaaattttaaagcaaaatttgacaatttcaccccttataa 352  Q
    |||||| | |||| |||||||| ||||||||  |||||||||||||||| || |||||||||||    
T  4828345 ttgtcccacaatatttgaccttctcaaatttctaagcaaaatttgacaaatttaccccttataa 4828282  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 352
Target Start/End: Complemental strand, 42847163 - 42847100
Alignment:
Q  289 ttgtcctaaaataattgaccttttcaaattttaaagcaaaatttgacaatttcaccccttataa 352  Q
    |||||| | |||| |||||||||||| ||||| ||||| |||||||||| || |||||||||||    
T  42847163 ttgtcccataatacttgaccttttcagatttttaagcagaatttgacaaatttaccccttataa 42847100  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 352
Target Start/End: Original strand, 16964869 - 16964923
Alignment:
Q  298 aataattgaccttttcaaattttaaagcaaaatttgacaatttcaccccttataa 352  Q
    |||| |||||||| ||||||||| ||| |||||||||||| || |||||||||||    
T  16964869 aatacttgaccttctcaaatttttaagtaaaatttgacaagtttaccccttataa 16964923  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 22337755 - 22337839
Alignment:
Q  289 ttgtcctaaaataattgaccttttcaaattttaaagcaaaatttgacaatttcaccccttataattgcttgtatggtctccatgt 373  Q
    |||||| |||||| |||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  22337755 ttgtcccaaaatacttgaccttctcaaattttaaagcaaaaattgacaattttaccccttataattgcttgtatggtctccatgt 22337839  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 22619575 - 22619652
Alignment:
Q  296 aaaataattgaccttttcaaattttaaagcaaaatttgacaatttcaccccttataattgcttgtatggtctccatgt 373  Q
    |||||| |||| ||| ||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||    
T  22619575 aaaatacttgatcttctcaaattttaaagcaaaatttgacaatttgactccttataattgctagtatggtctccatgt 22619652  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 10441188 - 10441272
Alignment:
Q  289 ttgtcctaaaataattgaccttttcaaattttaaagcaaaatttgacaatttcaccccttataattgcttgtatggtctccatgt 373  Q
    |||||| |||||| |||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  10441188 ttgtcccaaaatacttgaccttctcaaattttaaagcaaaatttgacaattttacctcttataattgcttgtatggtctccatgt 10441272  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 296 - 373
Target Start/End: Complemental strand, 28690144 - 28690067
Alignment:
Q  296 aaaataattgaccttttcaaattttaaagcaaaatttgacaatttcaccccttataattgcttgtatggtctccatgt 373  Q
    |||||| |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||    
T  28690144 aaaatatttgaccttctcaaattttaaagcaaaatttgacaattttatcccttataattgcttgtatgatctccatgt 28690067  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 41555515 - 41555568
Alignment:
Q  298 aataattgaccttttcaaattttaaagcaaaatttgacaatttcaccccttata 351  Q
    ||||||||||||| ||||||||| ||||  |||||||||| || ||||||||||    
T  41555515 aataattgaccttctcaaatttttaagcttaatttgacaagtttaccccttata 41555568  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 297 - 373
Target Start/End: Original strand, 30459858 - 30459934
Alignment:
Q  297 aaataattgaccttttcaaattttaaagcaaaatttgacaatttcaccccttataattgcttgtatggtctccatgt 373  Q
    ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30459858 aaatacttgaccttctcaaattttaaagcaaaatttgacaattttaccccttataattgcttgtatggtctccatgt 30459934  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 11146821 - 11146897
Alignment:
Q  296 aaaataattgaccttttcaaattttaaagcaaaatttgacaatttcaccccttataattgcttgtatggtctccatgt 373  Q
    |||||| |||||||| |||||||||||| |||||||||||||||| || |||||||||||||||||||| ||||||||    
T  11146821 aaaatacttgaccttatcaaattttaaaacaaaatttgacaattttactccttataattgcttgtatgg-ctccatgt 11146897  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 13243793 - 13243739
Alignment:
Q  298 aataattgaccttttcaaattttaaagcaaaatttgacaatttcaccccttataa 352  Q
    |||| |||||||| ||||||||  ||||| |||||||||| ||||||||||||||    
T  13243793 aatatttgaccttctcaaatttctaagcagaatttgacaaattcaccccttataa 13243739  T

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