View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13043_low_7 (Length: 405)
Name: NF13043_low_7
Description: NF13043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13043_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 337
Target Start/End: Original strand, 47865586 - 47865919
Alignment:
| Q |
10 |
catcatcatctcagaaaaccgcacctaacccccaagtattttcctgttgcaaatttgcatctaagtatgctttaatccagcccctaactggttttttcta |
109 |
Q |
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|||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| | |
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| T |
47865586 |
catcttcatcttagaaaaccgcacccaacccccaggtattttcctgttgcaaatttgcatctgagtatgctttaatccagcccctaacttgtttttttca |
47865685 |
T |
|
| Q |
110 |
tcgcaaattctgaggatttcactgattaatttgttgactgtgaacagggaatacacggttaggtcccagatcagaggttaaagagt-----acaaagtgg |
204 |
Q |
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|||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
47865686 |
tcgcaaattctgagaatttcgctgattaatttgttgactatgaacagggaatacacggttaggtcccagatcagaggttaaagagtaagaaacaaaatgg |
47865785 |
T |
|
| Q |
205 |
ttgaaactaataaatcggaaacaatacaatccagtagtggcagaatgttcaggaacatcaatctgaaactaataacac-tttaaaaagagacagagccaa |
303 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47865786 |
ttgaaactaataaatcggaaacaatacaatccagttggggcagaatgttcaggaacatcaatctgaaactaataacacttttaaaaagagacagagccaa |
47865885 |
T |
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| Q |
304 |
gggagaacaaagaaattgcaataatcagtaaaaa |
337 |
Q |
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|||||||||| |||||| |||||||||||||||| |
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| T |
47865886 |
gggagaacaatgaaattacaataatcagtaaaaa |
47865919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 47865981 - 47866015
Alignment:
| Q |
356 |
aaaaacaaatcacgatgaaatagggagtgagagag |
390 |
Q |
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| T |
47865981 |
aaaaacaaatcacgatgaaatagggagtgagagag |
47866015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 337
Target Start/End: Complemental strand, 19469732 - 19469397
Alignment:
| Q |
10 |
catcatcatctcagaaaaccgcacctaacccccaagtattttcctgttgcaaatttgcatctaagtatgctttaat--ccagcccctaactggttttttc |
107 |
Q |
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|||| ||||||||||||||| |||| |||||||| |||||||||| ||| | |||||||||| ||||||||||||| ||||||||||| |||||||||| |
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| T |
19469732 |
catcttcatctcagaaaaccacacccaacccccaggtattttcctattgtagatttgcatctgagtatgctttaatatccagcccctaattggttttttc |
19469633 |
T |
|
| Q |
108 |
tatcgcaaattctgaggatttcactgattaatttgttgactgtgaacagggaatacacggttaggtcccagatcagaggttaaagagt-----acaaagt |
202 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
19469632 |
catcgcaaattctgaggatttcgctgattaatttgttgactgtgaacagggaatacacggttaggtcccagatcagaggttaaagagtaagaaacaaaat |
19469533 |
T |
|
| Q |
203 |
ggttgaaactaataaatcggaaacaatacaatccagtagtggcagaatgttcaggaacatcaatctgaaactaataacac-tttaaaaagagacagagcc |
301 |
Q |
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|| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
19469532 |
cattaaaactaataaatcggaaacaatacaatccagttggggcagaatgttcaggaacatcaatctgaaactaataacacttttaaaaagagacagggct |
19469433 |
T |
|
| Q |
302 |
aagggagaacaaagaaattgcaataatcagtaaaaa |
337 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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|
| T |
19469432 |
aagggagaacaaagaaattgcaataatcagtaaaaa |
19469397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 19469333 - 19469299
Alignment:
| Q |
356 |
aaaaacaaatcacgatgaaatagggagtgagagag |
390 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
19469333 |
aaaaacaaatcacgatgaaatagggagtgagagag |
19469299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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