View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13043_low_8 (Length: 369)
Name: NF13043_low_8
Description: NF13043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13043_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 86 - 281
Target Start/End: Complemental strand, 26211628 - 26211437
Alignment:
| Q |
86 |
tggtcggttgtttaatcatctttacctttaactttaacctcctctacaacatcatgtttatttaatgcttctttttcttcctcaaaacacaaaacattaa |
185 |
Q |
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| T |
26211628 |
tggtcggttgtttaatcatctttacctttaactttaacctcctctacaacatcatgtttatttaatgcttctttttcttcctcaaaacacaaaacattaa |
26211529 |
T |
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| Q |
186 |
cctttaccaaaccatgttcattcttttatgcaacgnnnnnnnnnnnnnnacaacctcaaaaagaaacattctcattcacgttcctattcaattatt |
281 |
Q |
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| T |
26211528 |
cctttaccaaaccatgttcattcttttatgcaacg----tatatatataacaacctcaaaaagaaacattctcattcacgttcctattcaattatt |
26211437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 354
Target Start/End: Complemental strand, 26211394 - 26211364
Alignment:
| Q |
324 |
tggagatattgtcacaaatgtggtcattgtt |
354 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
26211394 |
tggagatattgtcacaaatgtggtcattgtt |
26211364 |
T |
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