View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13043_low_9 (Length: 342)
Name: NF13043_low_9
Description: NF13043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13043_low_9 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 36100165 - 36100491
Alignment:
| Q |
1 |
acaaccttaacaattttcatgtctgtttcaacaacaacatcactatcacccattcaaaatcttctcaattgtttttatcattattctcaatcttttaatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36100165 |
acaaccttaacaattttcatgtctgtttcaacaacaacatcactatcacccattcaaaatcttctcaattgtttttatcattattctcaatcttttaatt |
36100264 |
T |
|
| Q |
101 |
catctgacattatttacggtccaaaaaacccctcattctcaaccatcctaaatatgaaaatacataacaagagatttaaaatagcaacatcaccaaaagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36100265 |
catctgacattatttacggtccaaaaaacccctcattctcaaccatcctaaatatgaaaatacataacaagagatttaaaacagcaacatcaccaaaagc |
36100364 |
T |
|
| Q |
201 |
tttagcaattataactccaaaagatggttctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtggcggccac |
300 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36100365 |
tttagcaattataactccaaaagatgattctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtggcggccac |
36100464 |
T |
|
| Q |
301 |
gattatgaaggcttctcatacttatca |
327 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
36100465 |
gattatgaaggcttctcatacttatca |
36100491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 7 - 320
Target Start/End: Original strand, 21482168 - 21482475
Alignment:
| Q |
7 |
ttaacaattttcatgtctgtttcaacaacaacatcactatcacccattcaaaatcttctcaattgtttttatcattattctcaatcttttaattcatctg |
106 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||| ||||||| |||||||| |||||||||| |||| ||| | || | || | || || |||| |
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| T |
21482168 |
ttaacaattgtcatgtctatttcaacaacaacatcacaatcaccctttcaaaattttctcaattgcttttctcaatctttgaattcctcta--tc-tctg |
21482264 |
T |
|
| Q |
107 |
acattatttacggtccaaaaaacccctcattctcaaccatcctaaatatgaaaatacataacaagagatttaaaatagcaacatcaccaaaagctttagc |
206 |
Q |
| |
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| || |||||| |||||| || |||||||||||||||||| || ||||||||||| |||||||||||||||| ||||| |||||||| |||| || |
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| T |
21482265 |
atatcatttacactccaaacaatatctcattctcaaccatcctcaacatgaaaatacaaaacaagagatttaaaa---caacaacaccaaaacctttggc |
21482361 |
T |
|
| Q |
207 |
aattataactccaaaagatggttctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtggcggccacgattat |
306 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||| |||||||| |||| ||||| ||||| | || | ||||||||||||||||||||||| | | |
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| T |
21482362 |
aattataactgcaaaagatgattctcatgtccaagcaacaattcaatgcctcaaaagtaacaaaattcagatcagaatccgaagtggcggccacgacttt |
21482461 |
T |
|
| Q |
307 |
gaaggcttctcata |
320 |
Q |
| |
|
||||| |||||||| |
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|
| T |
21482462 |
gaaggtttctcata |
21482475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 131 - 320
Target Start/End: Original strand, 36107554 - 36107743
Alignment:
| Q |
131 |
cctcattctcaaccatcctaaatatgaaaatacataacaagagatttaaaatagcaacatcaccaaaagctttagcaattataactccaaaagatggttc |
230 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||| || ||||||||||||| ||||||| |||||||| |||| |||||||||||| ||||||||| ||| |
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|
| T |
36107554 |
cctcattctcaactatcctcaacatgaaaatacaaaataagagatttaaaacagcaacaacaccaaaacctttggcaattataactgcaaaagatgattc |
36107653 |
T |
|
| Q |
231 |
tcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtggcggccacgattatgaaggcttctcata |
320 |
Q |
| |
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||| ||||| |||||||||||||||||||| ||||||| | || | ||||| ||||||||||| ||||| |||||||| || ||||| |
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| T |
36107654 |
gcatatccaagaaacaattaaatgtgccaaaagcaacaacattcagattagaattcgaagtggcggtcacgactatgaaggtttttcata |
36107743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 311
Target Start/End: Complemental strand, 36090899 - 36090601
Alignment:
| Q |
20 |
tgtctgtttcaacaacaacatcactatcacccattcaaaatcttctcaattgtttttatcattattctcaatcttttaattca------tctgacattat |
113 |
Q |
| |
|
|||||||||| ||||||||||||| ||| |||||| ||||| |||||| |||||||| |||||||||||||||||| ||||| |||||||| || |
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|
| T |
36090899 |
tgtctgtttctacaacaacatcacaatctcccatttaaaattttctcacttgtttttctcattattctcaatctttgaattcccatgtttctgacatcat |
36090800 |
T |
|
| Q |
114 |
ttacggtccaaaaaacccctcattctcaaccatcctaaatatgaaaatacataacaagagatttaaaatagcaac-atcaccaaaagctttagcaattat |
212 |
Q |
| |
|
|||| || ||| ||| ||||||||| ||||||| | || |||||||||||| |||||||||| |||| |||||| | ||| |||| |||| |||||||| |
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|
| T |
36090799 |
ttacactcaaaacaacacctcattcttaaccatcttcaacatgaaaatacattacaagagattcaaaacagcaacaaacactaaaacctttggcaattat |
36090700 |
T |
|
| Q |
213 |
aactccaaaagatggttctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtggcggccacgattatgaagg |
311 |
Q |
| |
|
||| ||| ||| |||| ||||||||| |||| |||||||||| |||| |||||| | || | ||||| ||||||||||| || ||||| ||||| |
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|
| T |
36090699 |
aacagtaaaggatagttcccatgtccaagtaacagttaaatgtgctaaaagtaacaacattcagatcagaattcgaagtggcggacatgattacgaagg |
36090601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 327
Target Start/End: Complemental strand, 34972199 - 34971895
Alignment:
| Q |
29 |
caacaacaacatcactatcacccattcaaaatcttctcaattgtttttatcattattctcaatcttttaatt------catctgacattatttacggtcc |
122 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||| || ||||||| |||| |||||||| ||| || | | ||||| | |||||| || |
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| T |
34972199 |
caacaacaacatcacaatcacccattcaaaattttcttaactgtttttctcataattctcaagcttcaaactttgttgcctctgaagtcatttacacacc |
34972100 |
T |
|
| Q |
123 |
aaaaaacccctcattctcaaccatcctaaatatgaaaatacataacaagagatttaaaatagcaacatcaccaaaagctttagcaattataactccaaaa |
222 |
Q |
| |
|
||| || ||||||||||| |||| |||||| | | ||||| ||||||| ||||||| | ||||| | ||||| |||| |||||||||||| ||||| |
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|
| T |
34972099 |
aaacaatacctcattctcagccatactaaatgtaagaatactaaacaagatatttaaagcaacaacaaccccaaagcctttggcaattataactgcaaaa |
34972000 |
T |
|
| Q |
223 |
gatggttctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtggcggccacgattatgaaggcttctcatact |
322 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||| |||||| | || ||||||| |||||||| || || || |||||||| || ||||| | |
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|
| T |
34971999 |
gatgtttctcatgtccaagcaacaattaaatgtgccaaaagtaacaacattcagataagaattcgaagtggagggcatgactatgaaggtttatcatatt |
34971900 |
T |
|
| Q |
323 |
tatca |
327 |
Q |
| |
|
||||| |
|
|
| T |
34971899 |
tatca |
34971895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 8338052 - 8338375
Alignment:
| Q |
1 |
acaaccttaacaattttcatgtctgtttcaacaacaacatcactatcacccattcaaaatcttctcaattgtttttatcattattctcaatcttttaatt |
100 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||| |||| ||||| ||| | ||||||||||||||| ||| ||| | || || | |
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|
| T |
8338052 |
acaaccttaacaatttttatgtctatttcaacaacaacatcacaatcatccatttaaacttttctcaattgtttttctcaaacttcaaattccccta--t |
8338149 |
T |
|
| Q |
101 |
catctgacattatttacggtccaaaaaacccctcattctcaaccatcctaaatatgaaaatacataacaagagatttaaaatagcaacatcaccaaaagc |
200 |
Q |
| |
|
| ||||| | |||||| ||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||| ||| | |||| |||||||| | |
|
|
| T |
8338150 |
c-tctgaagtcatttacacaccaaacaacacctcattctcaaccatcctaaacatgaaaatacataacaagagatttgaaacaaaaacaacaccaaaatc |
8338248 |
T |
|
| Q |
201 |
tttagcaattataactccaaaagatggttctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtggcggccac |
300 |
Q |
| |
|
||| |||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||| |||||| | || ||||||| ||||||||||||||| |
|
|
| T |
8338249 |
tttggcaattataactgcaaaagatgcttctcatgtccaagcaacaattaaatgtgccaaaagcaacaatattcagataagaattcgaagtggcggccac |
8338348 |
T |
|
| Q |
301 |
gattatgaaggcttctcatacttatca |
327 |
Q |
| |
|
|| || ||||||||||| ||| ||||| |
|
|
| T |
8338349 |
gactacgaaggcttctcttacgtatca |
8338375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 121 - 311
Target Start/End: Original strand, 6838305 - 6838495
Alignment:
| Q |
121 |
ccaaaaaacccctcattctcaaccatcctaaatatgaaaatacataacaagagatttaaaatagcaacatcaccaaaagctttagcaattataactccaa |
220 |
Q |
| |
|
||||| ||| ||||||||||||| ||||| || || |||||||| || ||||||||||||| ||||||| |||| || |||| |||||||||||| || |
|
|
| T |
6838305 |
ccaaacaacacctcattctcaactatcctcaacataaaaatacaaaataagagatttaaaacagcaacaacaccgaagcctttggcaattataactgtaa |
6838404 |
T |
|
| Q |
221 |
aagatggttctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtggcggccacgattatgaagg |
311 |
Q |
| |
|
|||||| ||||||||||||| |||| ||||||||||||||| ||||||| | || | ||||| |||||||| || ||||| |||||||| |
|
|
| T |
6838405 |
aagatgattctcatgtccaagaaacagttaaatgtgccaaaagcaacaacattcagattagaattcgaagtggtggtcacgactatgaagg |
6838495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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