View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13044_high_1 (Length: 1157)
Name: NF13044_high_1
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_high_1 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 834; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 834; E-Value: 0
Query Start/End: Original strand, 27 - 943
Target Start/End: Complemental strand, 35878733 - 35877826
Alignment:
| Q |
27 |
atcatatctaaatatctttctatgaggtgtcatcttagtgctaaaagtttagcctactagtctcaagggacagagttctaacctcaacggagacagttta |
126 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35878733 |
atcatatctaaatatctttctgtgaggtgtcatcttagtgctaagagtttagcctactagtctcaagggacagagttctaacctcaacggagacagttta |
35878634 |
T |
|
| Q |
127 |
acgataagtggaaaaatcgctcaagcagcgcgagtatataaacacaagttatgtaaatcctaagtttgaataatagaaaggtactgcagccacactgtag |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35878633 |
acgataagtggaaaaatcgctcaagcagcgcgagtatataaacataagttatgtaaatcctaagtttgaataatagaaaggtactgcagccacactgtag |
35878534 |
T |
|
| Q |
227 |
ccggagacaagcataatcggctgaactttgtgatcaaatattgtgtgttctctatttacgtttttcgtatctttttactttagaactggtttactgctct |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| |||||||||||||| |
|
|
| T |
35878533 |
ccggagacaagcataatcggctgaactttgtgatcaaatattgtgt--tctctatttacgtttct--------tttactttagaaatggtttactgctct |
35878444 |
T |
|
| Q |
327 |
aaaattttctcaggggagtgaataaacatgtggaatcgaaaacgttacacataccaaaacatgaa-gacatagatttgttcaagtttgactgtatcagac |
425 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35878443 |
aaaattttctaaggggagtgaataaacatgtggaatcgaaaacgttacacataccaaaacatgaaagacatagatttgttcaagtttgactgtatcagac |
35878344 |
T |
|
| Q |
426 |
ataaagcgatagcaaaataaaaaatgaagcttaccagctccaattgcgtagacatttttcaatccacccatgacctcatgtgtgacaaggtcactattgt |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35878343 |
ataaagcgatagcaaaataaaaaatgaagcttaccagctccaattgcgtagacatttttcaatccacccatgacctcatgtgtgacaaggtcactattgt |
35878244 |
T |
|
| Q |
526 |
cccatacaatgaaatgtggttgtctaagaaactttgctaaaggtttcctccatttctcagctccacaaattctagcattggcatattccttgttgtagat |
625 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35878243 |
cccatacaatgaaatgtggttgtctaagaaactttgctaaaggtttcctccatttctcagccccacaaattctagcattggcatattccttgttgtagat |
35878144 |
T |
|
| Q |
626 |
ttctgaagcaatatttggaccaccaagataaagtatgttctccataggcacgccagctgtcgattttgcattgcaaagagtgaagaatgagggatgaaag |
725 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35878143 |
ttctgaagcaatatttggaccaccaagataaagtatgttctccataggcacgccagctgtcgattttgcattgcaaagagtgaagaatgagggatgaaag |
35878044 |
T |
|
| Q |
726 |
gactaaatttttgcattgaaatataaggactactaagcacaaaaaatttcatttcttggaatcaaacacatactacataagaaatattatgtttttgccg |
825 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35878043 |
gactaaatttttgcattgaaatataaggactactaagcacaaaaaatttcatttcttggaatcaaacacatactacataataaatattatgtttttgcca |
35877944 |
T |
|
| Q |
826 |
gagaactatcacaattcaacaactgatttgtaatgtgcttcagtatgaaaatgaacacaataggtttttgtaaattgaattcgttacgttgattcaagaa |
925 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35877943 |
gagaactatcacaattcaacaactgatttgtaatgtgcttcagtatgaaaatgaacacaataggtttttgtaaattgaattcgttacgttgattcaagaa |
35877844 |
T |
|
| Q |
926 |
ctccaagatttttggtaa |
943 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
35877843 |
ctccaagatttttggtaa |
35877826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 3e-82
Query Start/End: Original strand, 981 - 1144
Target Start/End: Complemental strand, 35877824 - 35877661
Alignment:
| Q |
981 |
tggtatagcattcaaatttagacaactttcggaacaacttttaagtggttaacacaactcaaatagatggttaaacgtgttcaatcgatgaataatgaat |
1080 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35877824 |
tggtatagcattcaaatttagacaactttcggaacaacttttaagtggttaacacaactcaaatagatggttaaacgtgttcaatcgatgattaatgaat |
35877725 |
T |
|
| Q |
1081 |
ataataggtgtcaaaatcattaaccaccgacgttaattcattaaccactaatttggatgtaact |
1144 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35877724 |
ataataggtgtcaaaatcattaaccgccgacgttaattcattaaccactaatttggatgtaact |
35877661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 996 - 1052
Target Start/End: Complemental strand, 5008767 - 5008710
Alignment:
| Q |
996 |
atttagacaactttcggaacaactttt-aagtggttaacacaactcaaatagatggtt |
1052 |
Q |
| |
|
|||||||||||||| | ||||||||| ||||||||||||||| ||||||| |||||| |
|
|
| T |
5008767 |
atttagacaacttttgtgacaactttttaagtggttaacacaattcaaataaatggtt |
5008710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 456 - 655
Target Start/End: Complemental strand, 193366 - 193167
Alignment:
| Q |
456 |
ttaccagctccaattgcgtagacatttttcaatccacccatgacctcatgtgtgacaaggtcactattgtcccatacaatgaaatgtggttgtctaagaa |
555 |
Q |
| |
|
||||| |||||||| || || ||||| || ||||||||||| || ||||| || ||||| ||| ||||||||| || || || |||| || || | || |
|
|
| T |
193366 |
ttacctgctccaatagcatatacattctttaatccacccataacttcatgagtaacaagatcaacattgtcccacactataaagtgtgcctgcctcaaaa |
193267 |
T |
|
| Q |
556 |
actttgctaaaggtttcctccatttctcagctccacaaattctagcattggcatattccttgttgtagatttctgaagcaatatttggaccaccaagata |
655 |
Q |
| |
|
||||||| || |||||||||||||| || |||||||| |||| |||||| |||||||| |||||||| || || || ||||| || ||||| |||||||| |
|
|
| T |
193266 |
actttgccaatggtttcctccatttttctgctccacatattcgagcatttgcatattctttgttgtaaatctcagaggcaatgttaggacctccaagata |
193167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 456 - 655
Target Start/End: Original strand, 14624017 - 14624216
Alignment:
| Q |
456 |
ttaccagctccaattgcgtagacatttttcaatccacccatgacctcatgtgtgacaaggtcactattgtcccatacaatgaaatgtggttgtctaagaa |
555 |
Q |
| |
|
||||| |||||||| || || ||||| || ||||||||||| || ||||| || ||||| ||| ||||||||| || || || |||| || || | || |
|
|
| T |
14624017 |
ttacctgctccaatagcatatacattctttaatccacccataacttcatgagtaacaagatcaacattgtcccacactataaagtgtgcctgcctcaaaa |
14624116 |
T |
|
| Q |
556 |
actttgctaaaggtttcctccatttctcagctccacaaattctagcattggcatattccttgttgtagatttctgaagcaatatttggaccaccaagata |
655 |
Q |
| |
|
||||||| || |||||||||||||| || |||||||| |||| |||||| |||||||| |||||||| || || || ||||| || ||||| |||||||| |
|
|
| T |
14624117 |
actttgccaatggtttcctccatttttctgctccacatattcgagcatttgcatattctttgttgtaaatctcagaggcaatgttaggacctccaagata |
14624216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 307
Target Start/End: Original strand, 39513519 - 39513651
Alignment:
| Q |
177 |
atgtaaatcctaagtttgaataatagaaaggtactgcagccacactgtag-ccggagac--aagcataatcggctgaactttgtgatcaaatattgtgtg |
273 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| | |||||| | |||||| | |||| | ||||||| | ||||||||||| |||| || |
|
|
| T |
39513519 |
atgtaaatcctaagcttgaataatagaaaggtactgcagctgctctgtagtcgggagacctaggcat-tttggctgaattctgtgatcaaatcttgtttg |
39513617 |
T |
|
| Q |
274 |
ttctctatttacgtttttcgtatctttttacttt |
307 |
Q |
| |
|
|||||| ||| |||||||||||||| ||| |||| |
|
|
| T |
39513618 |
ttctctgtttgcgtttttcgtatctgtttgcttt |
39513651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 6522181 - 6522143
Alignment:
| Q |
178 |
tgtaaatcctaagtttgaataatagaaaggtactgcagc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6522181 |
tgtaaatcctaagtttgaataatagaaaggtactacagc |
6522143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 13006439 - 13006500
Alignment:
| Q |
235 |
aagcataatcggctgaactttgtgatcaaatattgtgtgttctctatttacgtttttcgtat |
296 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||| || |||| |||| |
|
|
| T |
13006439 |
aagcataattggctgaactttgtgatcaaatatcatgtgttctctatttgcgatttttgtat |
13006500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1093 - 1135
Target Start/End: Original strand, 28609875 - 28609917
Alignment:
| Q |
1093 |
aaaatcattaaccaccgacgttaattcattaaccactaatttg |
1135 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||| |||||| |
|
|
| T |
28609875 |
aaaatcattaacccccgacgttacttcattaaccacaaatttg |
28609917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 5055860 - 5055910
Alignment:
| Q |
260 |
tcaaatattgtgtgttctctatttacgtttttcgtatctttttactttagaac |
312 |
Q |
| |
|
|||||||||||||||||||| | | |||||||||||||||||||||| |||| |
|
|
| T |
5055860 |
tcaaatattgtgtgttctctctgt--gtttttcgtatctttttacttttgaac |
5055910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 28026963 - 28026906
Alignment:
| Q |
258 |
gatcaaatattgtgtgttctctatttacgtttttcgtatctttttactttagaactgg |
315 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
28026963 |
gatcaaatatcttgtgttctctatttgtgtttttcgtatctttttacttttgaactgg |
28026906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 313
Target Start/End: Original strand, 29821742 - 29821799
Alignment:
| Q |
256 |
gtgatcaaatattgtgtgttctctatttacgtttttcgtatctttttactttagaact |
313 |
Q |
| |
|
|||||||||||| |||||||||| |||| | |||||||||||||||||||| ||||| |
|
|
| T |
29821742 |
gtgatcaaatatagtgtgttctccatttgtgattttcgtatctttttacttttgaact |
29821799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 313
Target Start/End: Complemental strand, 33717270 - 33717214
Alignment:
| Q |
257 |
tgatcaaatattgtgtgttctctatttacgtttttcgtatctttttactttagaact |
313 |
Q |
| |
|
||||||||| ||||||||||||| ||| | |||||||||||| |||||||| ||||| |
|
|
| T |
33717270 |
tgatcaaatcttgtgtgttctctgtttgcatttttcgtatctgtttacttttgaact |
33717214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1054
Target Start/End: Complemental strand, 27891557 - 27891496
Alignment:
| Q |
993 |
caaatttagacaactttcggaacaacttttaagtggttaacacaactcaaatagatggttaa |
1054 |
Q |
| |
|
||||||||||||||||| | |||| ||| ||||||||||||||| ||||||| |||||||| |
|
|
| T |
27891557 |
caaatttagacaactttggtgacaattttgaagtggttaacacaaatcaaataaatggttaa |
27891496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 994 - 1054
Target Start/End: Original strand, 27983250 - 27983310
Alignment:
| Q |
994 |
aaatttagacaactttcggaacaacttttaagtggttaacacaactcaaatagatggttaa |
1054 |
Q |
| |
|
||||||| |||||||| | |||||||||||||||||||||||| ||||| || ||||||| |
|
|
| T |
27983250 |
aaatttacacaacttttgcgacaacttttaagtggttaacacaaatcaaacaggtggttaa |
27983310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 54644194 - 54644227
Alignment:
| Q |
257 |
tgatcaaatattgtgtgttctctatttacgtttt |
290 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
54644194 |
tgatcaaatattgtgtgttctctatttacatttt |
54644227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University