View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13044_high_10 (Length: 512)

Name: NF13044_high_10
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13044_high_10
NF13044_high_10
[»] chr3 (20 HSPs)
chr3 (10-374)||(41755056-41755419)
chr3 (399-495)||(41754935-41755031)
chr3 (262-374)||(11511302-11511414)
chr3 (263-374)||(55122137-55122248)
chr3 (264-374)||(55121529-55121639)
chr3 (267-374)||(50122319-50122426)
chr3 (263-369)||(11510172-11510278)
chr3 (307-374)||(52087638-52087705)
chr3 (264-345)||(1387456-1387537)
chr3 (264-345)||(41754321-41754401)
chr3 (442-495)||(55122018-55122071)
chr3 (398-439)||(11510335-11510376)
chr3 (265-300)||(31951854-31951889)
chr3 (328-376)||(5136584-5136632)
chr3 (401-437)||(41754455-41754491)
chr3 (324-371)||(51755476-51755523)
chr3 (260-313)||(6525375-6525428)
chr3 (398-431)||(55121693-55121726)
chr3 (294-374)||(6144324-6144403)
chr3 (262-374)||(6842447-6842559)
[»] scaffold0153 (1 HSPs)
scaffold0153 (264-374)||(17392-17502)
[»] chr7 (13 HSPs)
chr7 (263-374)||(46088916-46089027)
chr7 (400-495)||(46089072-46089167)
chr7 (264-372)||(46089676-46089784)
chr7 (264-369)||(46741410-46741515)
chr7 (262-374)||(47405453-47405565)
chr7 (264-374)||(45350841-45350954)
chr7 (264-374)||(35200789-35200900)
chr7 (264-369)||(31873335-31873440)
chr7 (323-374)||(30846821-30846875)
chr7 (264-374)||(4997289-4997400)
chr7 (262-344)||(47776264-47776346)
chr7 (264-369)||(19804631-19804736)
chr7 (267-374)||(9494832-9494942)
[»] chr2 (18 HSPs)
chr2 (262-376)||(33667868-33667982)
chr2 (265-369)||(33667702-33667806)
chr2 (264-374)||(13863012-13863121)
chr2 (264-344)||(958667-958747)
chr2 (267-376)||(16118981-16119090)
chr2 (323-374)||(29600756-29600807)
chr2 (262-313)||(30271006-30271057)
chr2 (323-374)||(39033547-39033598)
chr2 (264-374)||(43977527-43977638)
chr2 (307-369)||(16340578-16340640)
chr2 (325-374)||(33222611-33222663)
chr2 (263-345)||(43978176-43978258)
chr2 (262-339)||(3206745-3206821)
chr2 (267-328)||(19694175-19694236)
chr2 (399-435)||(13862930-13862966)
chr2 (331-371)||(16119124-16119164)
chr2 (263-339)||(42176014-42176090)
chr2 (276-344)||(42177273-42177341)
[»] chr4 (11 HSPs)
chr4 (264-345)||(53777101-53777182)
chr4 (272-374)||(40900648-40900750)
chr4 (284-369)||(40900224-40900309)
chr4 (264-311)||(53777198-53777245)
chr4 (262-320)||(31242833-31242891)
chr4 (262-320)||(26791581-26791639)
chr4 (457-495)||(40047754-40047792)
chr4 (278-339)||(67573-67634)
chr4 (262-339)||(9472790-9472867)
chr4 (325-374)||(46169227-46169276)
chr4 (277-349)||(39666537-39666609)
[»] chr6 (6 HSPs)
chr6 (263-367)||(5722990-5723094)
chr6 (264-374)||(19757891-19758002)
chr6 (314-369)||(25987122-25987177)
chr6 (398-435)||(25987232-25987269)
chr6 (323-374)||(117254-117305)
chr6 (323-374)||(17337644-17337695)
[»] chr1 (10 HSPs)
chr1 (264-376)||(10974748-10974860)
chr1 (264-374)||(33205418-33205528)
chr1 (291-374)||(18609056-18609138)
chr1 (323-374)||(26607461-26607512)
chr1 (269-367)||(21263308-21263406)
chr1 (324-374)||(37992576-37992626)
chr1 (323-369)||(49875370-49875416)
chr1 (264-369)||(15660260-15660365)
chr1 (324-369)||(49875001-49875046)
chr1 (265-369)||(52427527-52427631)
[»] chr5 (9 HSPs)
chr5 (263-374)||(39742508-39742622)
chr5 (263-302)||(42098236-42098275)
chr5 (263-339)||(30966706-30966782)
chr5 (262-374)||(19228672-19228787)
chr5 (267-320)||(6268106-6268159)
chr5 (262-303)||(30966024-30966065)
chr5 (331-376)||(35777042-35777087)
chr5 (327-374)||(2170581-2170631)
chr5 (264-344)||(13707357-13707437)
[»] chr8 (6 HSPs)
chr8 (262-337)||(21835245-21835320)
chr8 (323-374)||(44934513-44934564)
chr8 (323-369)||(25994442-25994488)
chr8 (323-369)||(43519898-43519944)
chr8 (327-374)||(40740903-40740953)
chr8 (323-367)||(41858518-41858562)
[»] scaffold1500 (1 HSPs)
scaffold1500 (276-344)||(818-886)
[»] scaffold1379 (1 HSPs)
scaffold1379 (263-370)||(464-574)


Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-178; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 10 - 374
Target Start/End: Complemental strand, 41755419 - 41755056
Alignment:
Q  10 ataatacttggcttcccctgtattctccttcttctcatcgcattcataatctctttttgtaatttggcatcttcttttctttcacaacatggatataatt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41755419 ataatacttggcttcccctgtattctccttcttctcatcgcattcataatctctttttgtaatttggcatcttcttttctttcacaacatggatagaatt 41755320  T
Q  110 agtgcttaaaaatctgaagtatagattcccagcatatctggattgtatatttactcatatttagaaaagaaggtgggcgagttacaacacaaatacttcc 209  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41755319 agtgcttaaaaatctgaagtatagattcccagcatatctagattgtatatttactcatatttagaaaagaaggtgggtgagttacaacacaaatacttcc 41755220  T
Q  210 aaatatataatccatcaaaatacatactctccttacctattatatcttgcacatgagaattgctgtttacacatgttataaggctgagaaacactaataa 309  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||    
T  41755219 aaatatataatcc-tcaaaatacatactctccttacctattatatcttgcacatgagaattgctgttgacacatgttataaggctgagaaacaccagtaa 41755121  T
Q  310 aagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 374  Q
    |||| ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  41755120 aagacgaaaatgtcccctcgacagttaactactgaaataatgaaccggctgcaattaactgccga 41755056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 399 - 495
Target Start/End: Complemental strand, 41755031 - 41754935
Alignment:
Q  399 catcggcacttaagtgccgaggatctcaaaactacaaatttggtagttaactgtgtcactatgtttggttttgcatgcggcatgatgctcttattat 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41755031 catcggcacttaagtgccgaggatctcaaaactacaaatttggtagttaactgtgtcactatgtttggttttgcatgcggcataatgctcttattat 41754935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 262 - 374
Target Start/End: Complemental strand, 11511414 - 11511302
Alignment:
Q  262 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgc 361  Q
    ||||||||||  ||| |||||||||||||||||||||||||| | ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  11511414 atgagaattgtcgttgacacatgttataaggctgagaaacaccagtaaaagacgaaaatgcctcctcgacagttaactaccgaaataatgaaccggctgc 11511315  T
Q  362 agttaactgccga 374  Q
    |||||||| ||||    
T  11511314 agttaactaccga 11511302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 263 - 374
Target Start/End: Complemental strand, 55122248 - 55122137
Alignment:
Q  263 tgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgca 362  Q
    ||||||||| ||||  ||||||| ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  55122248 tgagaattgttgttggcacatgtcataagactgagaaacactagtaaaagacgaaaatgccccctcgacagttaactaccgaaataatgaaccggttgca 55122149  T
Q  363 gttaactgccga 374  Q
    ||||||| ||||    
T  55122148 gttaactcccga 55122137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 55121529 - 55121639
Alignment:
Q  264 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcag 363  Q
    |||||||| |||| ||||||||||||||||||| |||||||| |||| ||| |||||||||||||| ||||||||||||||||||||||||||| ||| |    
T  55121529 gagaattgttgttgacacatgttataaggctgataaacactagtaaaggataaaaatgccccctcggcagttaactaccgaaataatgaaccggttgcgg 55121628  T
Q  364 ttaactgccga 374  Q
    |||||| ||||    
T  55121629 ttaactaccga 55121639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 267 - 374
Target Start/End: Original strand, 50122319 - 50122426
Alignment:
Q  267 aattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagtta 366  Q
    ||||||||| |||||||||||||||||||| |||||| | ||||||| ||||||||| ||  ||||||||||||||||||| | ||||||||||||||||    
T  50122319 aattgctgtatacacatgttataaggctgaaaaacacaagtaaaagacgaaaatgccaccgtgacagttaactaccgaaattaagaaccggctgcagtta 50122418  T
Q  367 actgccga 374  Q
    ||||||||    
T  50122419 actgccga 50122426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 263 - 369
Target Start/End: Original strand, 11510172 - 11510278
Alignment:
Q  263 tgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgca 362  Q
    ||||||||| |||| ||||||||||||||||||| ||||||   ||||| | ||||||  ||||||||| ||||||||||||||||||||||| ||||||    
T  11510172 tgagaattgatgttgacacatgttataaggctgaaaaacaccggtaaaatacgaaaatatcccctcgacggttaactaccgaaataatgaaccagctgca 11510271  T
Q  363 gttaact 369  Q
    |||||||    
T  11510272 gttaact 11510278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 374
Target Start/End: Original strand, 52087638 - 52087705
Alignment:
Q  307 taaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 374  Q
    ||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  52087638 taaaagacgaaaataccccctcgacagttaactaccgaagtaatgaaccggctgcagttaagtgccga 52087705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 345
Target Start/End: Original strand, 1387456 - 1387537
Alignment:
Q  264 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaa 345  Q
    ||||||||||||||||||||| |||||| |||| ||| |||||||||||||||||||||| |  | ||||||||||||||||    
T  1387456 gagaattgctgtttacacatgctataagactgaaaaatactaataaaagatgaaaatgcctctgcaacagttaactaccgaa 1387537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 264 - 345
Target Start/End: Original strand, 41754321 - 41754401
Alignment:
Q  264 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaa 345  Q
    |||||||||| || |||||||||||||||||||||||||| | ||||||| |||||||| || |||||||||||||| ||||    
T  41754321 gagaattgcttttgacacatgttataaggctgagaaacac-agtaaaagacgaaaatgctccatcgacagttaactatcgaa 41754401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 442 - 495
Target Start/End: Complemental strand, 55122071 - 55122018
Alignment:
Q  442 tagttaactgtgtcactatgtttggttttgcatgcggcatgatgctcttattat 495  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||| |||||||    
T  55122071 tagttaactctgtcactatgtttggttttgcatgcggcataatgctgttattat 55122018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 439
Target Start/End: Original strand, 11510335 - 11510376
Alignment:
Q  398 ccatcggcacttaagtgccgaggatctcaaaactacaaattt 439  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  11510335 ccatcggcacttaagtgcctaggatctcaaaactacaaattt 11510376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 300
Target Start/End: Complemental strand, 31951889 - 31951854
Alignment:
Q  265 agaattgctgtttacacatgttataaggctgagaaa 300  Q
    ||||||||||||||||||||||||||||||||||||    
T  31951889 agaattgctgtttacacatgttataaggctgagaaa 31951854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 5136584 - 5136632
Alignment:
Q  328 cgacagttaactaccgaaataatgaaccggctgcagttaactgccgacg 376  Q
    ||||||||||||||||||||   ||||||||||||||||||| ||||||    
T  5136584 cgacagttaactaccgaaatttggaaccggctgcagttaactaccgacg 5136632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 437
Target Start/End: Original strand, 41754455 - 41754491
Alignment:
Q  401 tcggcacttaagtgccgaggatctcaaaactacaaat 437  Q
    |||||||||||||| ||||||||||||||||||||||    
T  41754455 tcggcacttaagtggcgaggatctcaaaactacaaat 41754491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 371
Target Start/End: Complemental strand, 51755523 - 51755476
Alignment:
Q  324 ccctcgacagttaactaccgaaataatgaaccggctgcagttaactgc 371  Q
    |||||||||||||||| ||||||||  ||||||||||| |||||||||    
T  51755523 ccctcgacagttaactgccgaaatatggaaccggctgccgttaactgc 51755476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 6525428 - 6525375
Alignment:
Q  260 acatgagaattgctgtttacacatgttataaggctgagaaacactaataaaaga 313  Q
    |||||| ||| ||||| ||||||||||| | ||||||||||||||| |||||||    
T  6525428 acatgaaaatggctgtatacacatgttaaagggctgagaaacactagtaaaaga 6525375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Original strand, 55121693 - 55121726
Alignment:
Q  398 ccatcggcacttaagtgccgaggatctcaaaact 431  Q
    ||||||||||||||||| ||||||||||||||||    
T  55121693 ccatcggcacttaagtgtcgaggatctcaaaact 55121726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 374
Target Start/End: Complemental strand, 6144403 - 6144324
Alignment:
Q  294 tgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 374  Q
    ||||||||||||||||   || |||||| ||| |||||| |||||| ||||| ||  ||||||||||||||||||| ||||    
T  6144403 tgagaaacactaataatttatcaaaatgtccc-tcgacaattaactgccgaattatggaaccggctgcagttaactaccga 6144324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 374
Target Start/End: Original strand, 6842447 - 6842559
Alignment:
Q  262 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgc 361  Q
    |||| ||||| ||| ||||| ||||| | |||||| |||||||| |||||||   |||| |||| ||| || |||||| ||||   | | ||||||||||    
T  6842447 atgaaaattgttgtatacacgtgttaaagggctgataaacactagtaaaagaccgaaataccccttcggcaattaactgccgaggaagttaaccggctgc 6842546  T
Q  362 agttaactgccga 374  Q
    |||||||||||||    
T  6842547 agttaactgccga 6842559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 17502 - 17392
Alignment:
Q  264 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcag 363  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  17502 gagaattgctgtttacacatgttataaggctgagaaacactagtaaaagacgaaaatgacccctcggcagttaactaccgaaataatgaaccggctgcag 17403  T
Q  364 ttaactgccga 374  Q
    |||||| ||||    
T  17402 ttaactaccga 17392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 263 - 374
Target Start/End: Original strand, 46088916 - 46089027
Alignment:
Q  263 tgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgca 362  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||  |||||||||||||| ||||||||||||||||||||||||||||||||    
T  46088916 tgagaattgttgtttacacatgttataaggctgagaaacactagtaaaagacaaaaatgccccctcgccagttaactaccgaaataatgaaccggctgca 46089015  T
Q  363 gttaactgccga 374  Q
    ||||||| ||||    
T  46089016 gttaactcccga 46089027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 400 - 495
Target Start/End: Original strand, 46089072 - 46089167
Alignment:
Q  400 atcggcacttaagtgccgaggatctcaaaactacaaatttggtagttaactgtgtcactatgtttggttttgcatgcggcatgatgctcttattat 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||    
T  46089072 atcggcacttaagtgccgaggatctcaaaactacaaatttggtagttaactgtgtgactatgtttggttttgcatgcggcataatgctgttattat 46089167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 264 - 372
Target Start/End: Complemental strand, 46089784 - 46089676
Alignment:
Q  264 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcag 363  Q
    |||||||||| || |||||||||||||||||||||||||| | ||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||||||    
T  46089784 gagaattgcttttgacacatgttataaggctgagaaacaccagtaaaagacgaaaatgccccctcggcagttaactaccaaaatagtgaaccggctgcag 46089685  T
Q  364 ttaactgcc 372  Q
    |||||||||    
T  46089684 ttaactgcc 46089676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 264 - 369
Target Start/End: Complemental strand, 46741515 - 46741410
Alignment:
Q  264 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcag 363  Q
    |||||||||| ||||||||||||||||| ||||||||||||| ||||||| ||||||| ||| |||||| |||||||||||||||||||| |||||||||    
T  46741515 gagaattgctctttacacatgttataagactgagaaacactagtaaaagacgaaaatgtcccttcgacaattaactaccgaaataatgaatcggctgcag 46741416  T
Q  364 ttaact 369  Q
    ||||||    
T  46741415 ttaact 46741410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 262 - 374
Target Start/End: Complemental strand, 47405565 - 47405453
Alignment:
Q  262 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgc 361  Q
    |||| ||||| ||| ||| |||||||||||| ||| ||||||   ||||||| ||||||| ||||||| ||||||||||| ||||||| |||||||||||    
T  47405565 atgaaaattgttgtatacgcatgttataaggttgaaaaacacatgtaaaagacgaaaatgtcccctcggcagttaactactgaaataaagaaccggctgc 47405466  T
Q  362 agttaactgccga 374  Q
    |||||||| ||||    
T  47405465 agttaactaccga 47405453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 45350841 - 45350954
Alignment:
Q  264 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccga--aataat-gaaccggctg 360  Q
    |||||||||||||||||||||||||||| ||||||||||| | ||||| |  ||||| |||||||  ||||||||| ||||  || |||  |||||||||    
T  45350841 gagaattgctgtttacacatgttataagactgagaaacaccagtaaaataccaaaataccccctctgcagttaactgccgaggaaaaataaaaccggctg 45350940  T
Q  361 cagttaactgccga 374  Q
    ||||||||||||||    
T  45350941 cagttaactgccga 45350954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 35200900 - 35200789
Alignment:
Q  264 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatg-aaccggctgca 362  Q
    |||||||| ||||||||||| | ||| |||||| ||||||   |||||||||||||||||||  || |||||| |||||||| |  || |||||||||||    
T  35200900 gagaattgttgtttacacatatgatagggctgaaaaacacatgtaaaagatgaaaatgcccctgcggcagttagctaccgaagttttgaaaccggctgca 35200801  T
Q  363 gttaactgccga 374  Q
    ||||||| ||||    
T  35200800 gttaactaccga 35200789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 369
Target Start/End: Original strand, 31873335 - 31873440
Alignment:
Q  264 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcag 363  Q
    |||||||| |||| |||||| | |||||||||| ||||||   |||||||||||||||| ||  || ||||||||||||||| |   |||||| ||||||    
T  31873335 gagaattgttgttgacacatatgataaggctgaaaaacacatgtaaaagatgaaaatgctcctgcggcagttaactaccgaagtttagaaccgactgcag 31873434  T
Q  364 ttaact 369  Q
    ||||||    
T  31873435 ttaact 31873440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 374
Target Start/End: Complemental strand, 30846875 - 30846821
Alignment:
Q  323 cccctcgacagttaactaccgaaat---aatgaaccggctgcagttaactgccga 374  Q
    ||||||||||||||||| |||||||   || ||||||||||||||||||||||||    
T  30846875 cccctcgacagttaactgccgaaattttaaagaaccggctgcagttaactgccga 30846821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 4997289 - 4997400
Alignment:
Q  264 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatg-aaccggctgca 362  Q
    |||||||||||||||||||| | ||| || ||| ||||||   ||||||| |||||| ||||  || ||||||||||||||| |  || |||||||| ||    
T  4997289 gagaattgctgtttacacatatgatagggttgaaaaacacatgtaaaagacgaaaatacccctacggcagttaactaccgaagttttgaaaccggctaca 4997388  T
Q  363 gttaactgccga 374  Q
    ||||||| ||||    
T  4997389 gttaactaccga 4997400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 344
Target Start/End: Original strand, 47776264 - 47776346
Alignment:
Q  262 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccga 344  Q
    |||||||||| ||||  ||||| | ||||||||||||||||| | ||||| | ||   |||||||||||||||||||| ||||    
T  47776264 atgagaattgatgttcccacatttgataaggctgagaaacacgagtaaaatacgattttgccccctcgacagttaactgccga 47776346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 369
Target Start/End: Complemental strand, 19804736 - 19804631
Alignment:
Q  264 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcag 363  Q
    |||||||| |||| |||||||| ||| | |||| ||||||   ||||||| |||||||| |   ||||| |||||||||||| |   |||||||||||||    
T  19804736 gagaattgttgttgacacatgtgataggactgaaaaacacatgtaaaagacgaaaatgctcatgcgacaattaactaccgaagtttggaaccggctgcag 19804637  T
Q  364 ttaact 369  Q
    ||||||    
T  19804636 ttaact 19804631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 374
Target Start/End: Complemental strand, 9494942 - 9494832
Alignment:
Q  267 aattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccga---aataatgaaccggctgcag 363  Q
    ||||| |||| |||||| | |||||||||||  |||| | ||||| | | | ||||||||||| ||||||||| ||||   | |||  ||||||||||||    
T  9494942 aattgttgttgacacatttcataaggctgaggcacacaagtaaaataggtatatgccccctcggcagttaactgccgaggaattaaaaaaccggctgcag 9494843  T
Q  364 ttaactgccga 374  Q
    |||||||||||    
T  9494842 ttaactgccga 9494832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 262 - 376
Target Start/End: Complemental strand, 33667982 - 33667868
Alignment:
Q  262 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgc 361  Q
    |||||||||| | || |||||||||||||||||||||||||| | ||||||| ||||||||| ||||  |||||||||||||||||||||||||||||||    
T  33667982 atgagaattgtttttgacacatgttataaggctgagaaacaccagtaaaagacgaaaatgcctcctcagcagttaactaccgaaataatgaaccggctgc 33667883  T
Q  362 agttaactgccgacg 376  Q
    |||||||| ||||||    
T  33667882 agttaactaccgacg 33667868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 265 - 369
Target Start/End: Original strand, 33667702 - 33667806
Alignment:
Q  265 agaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagt 364  Q
    ||||||||| || ||||||||||||||||||||||| || | ||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||    
T  33667702 agaattgcttttgacacatgttataaggctgagaaataccagtaaaagatgaaaatctcccctcggcagttaactaccgaaataatgaaccggctgcagt 33667801  T
Q  365 taact 369  Q
    |||||    
T  33667802 taact 33667806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 13863121 - 13863012
Alignment:
Q  264 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcag 363  Q
    |||||||||| || ||||||||||||||| |||||||||| ||||||||| ||||||| | | |||||||||||||| |||||||||||| | | |||||    
T  13863121 gagaattgctattgacacatgttataaggttgagaaacaccaataaaagacgaaaatg-ctcatcgacagttaactatcgaaataatgaatcagttgcag 13863023  T
Q  364 ttaactgccga 374  Q
    |||||| ||||    
T  13863022 ttaactcccga 13863012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 344
Target Start/End: Complemental strand, 958747 - 958667
Alignment:
Q  264 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccga 344  Q
    ||||||||||||| |||||||||||||||||||||||||| | ||||| |  ||||| |||||||  ||||||||||||||    
T  958747 gagaattgctgttcacacatgttataaggctgagaaacaccagtaaaataccaaaataccccctctgcagttaactaccga 958667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 376
Target Start/End: Original strand, 16118981 - 16119090
Alignment:
Q  267 aattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagtta 366  Q
    |||||||||| |||||| | ||| |||||| ||||||   |||| || |||||||||||  | || ||||||||||||| |||  ||||| |||||||||    
T  16118981 aattgctgttgacacatatgatagggctgaaaaacacatgtaaatgacgaaaatgcccctgcaacggttaactaccgaagtaagaaaccgactgcagtta 16119080  T
Q  367 actgccgacg 376  Q
    ||||||||||    
T  16119081 actgccgacg 16119090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 374
Target Start/End: Original strand, 29600756 - 29600807
Alignment:
Q  323 cccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 374  Q
    ||||||||||||||||| ||||| ||  ||||||||||||||||||| ||||    
T  29600756 cccctcgacagttaactgccgaattatggaaccggctgcagttaactaccga 29600807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 313
Target Start/End: Original strand, 30271006 - 30271057
Alignment:
Q  262 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaaga 313  Q
    |||||||||| ||| ||||||||||| | ||||||||||||||| |||||||    
T  30271006 atgagaattgttgtatacacatgttaaagggctgagaaacactagtaaaaga 30271057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 374
Target Start/End: Complemental strand, 39033598 - 39033547
Alignment:
Q  323 cccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 374  Q
    ||||||| ||||||||||||||| ||   |||||||||||||||||||||||    
T  39033598 cccctcggcagttaactaccgaattatgaaaccggctgcagttaactgccga 39033547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 43977527 - 43977638
Alignment:
Q  264 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatg-aaccggctgca 362  Q
    ||||||||||||||| |||| | |||  ||||| ||||||   ||||||| |||||||||||  || ||| ||||||||||| |  || |||||||||||    
T  43977527 gagaattgctgtttatacatatgatagagctgaaaaacacatgtaaaagacgaaaatgcccctgcggcagctaactaccgaagttttgaaaccggctgca 43977626  T
Q  363 gttaactgccga 374  Q
    ||||||| ||||    
T  43977627 gttaactaccga 43977638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 369
Target Start/End: Complemental strand, 16340640 - 16340578
Alignment:
Q  307 taaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagttaact 369  Q
    |||||||||||||||  ||  || ||||||||||||||| ||| ||||||| |||||||||||    
T  16340640 taaaagatgaaaatgttcctgcggcagttaactaccgaagtaaggaaccggttgcagttaact 16340578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 374
Target Start/End: Original strand, 33222611 - 33222663
Alignment:
Q  325 cctcgacagttaactaccgaaat---aatgaaccggctgcagttaactgccga 374  Q
    ||||| |||||||||||||||||   || ||||||||||||||||||||||||    
T  33222611 cctcggcagttaactaccgaaattttaaagaaccggctgcagttaactgccga 33222663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 345
Target Start/End: Complemental strand, 43978258 - 43978176
Alignment:
Q  263 tgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaa 345  Q
    ||||| ||||||||||||||| | ||| |||||| ||||||   ||||||| |||||||||||  ||  ||||||||||||||    
T  43978258 tgagagttgctgtttacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcccctgcggtagttaactaccgaa 43978176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 3206745 - 3206821
Alignment:
Q  262 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaact 339  Q
    |||| ||||| |||| |||||| | |||||||||| | ||||  ||||||||| |||||||||| |||||||||||||    
T  3206745 atgaaaattgatgttcacacatatcataaggctgaaacacacatataaaagattaaaatgcccc-tcgacagttaact 3206821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 328
Target Start/End: Original strand, 19694175 - 19694236
Alignment:
Q  267 aattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctc 328  Q
    |||||||||| |||||||||||| ||||||||||||| | ||||| |  ||||| |||||||    
T  19694175 aattgctgttcacacatgttatagggctgagaaacaccagtaaaataccaaaataccccctc 19694236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 435
Target Start/End: Complemental strand, 13862966 - 13862930
Alignment:
Q  399 catcggcacttaagtgccgaggatctcaaaactacaa 435  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  13862966 catcggcacttaattgccgaggatcttaaaactacaa 13862930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 371
Target Start/End: Complemental strand, 16119164 - 16119124
Alignment:
Q  331 cagttaactaccgaaataatgaaccggctgcagttaactgc 371  Q
    ||||| ||||||||| ||| |||||||||||||||||||||    
T  16119164 cagtttactaccgaagtaaagaaccggctgcagttaactgc 16119124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 339
Target Start/End: Original strand, 42176014 - 42176090
Alignment:
Q  263 tgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaact 339  Q
    ||||||||||||  ||||||| | |||||||||| |||||||| ||||| |  ||||| |||||||  |||||||||    
T  42176014 tgagaattgctgaatacacatttgataaggctgaaaaacactagtaaaataccaaaataccccctctgcagttaact 42176090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 344
Target Start/End: Complemental strand, 42177341 - 42177273
Alignment:
Q  276 ttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccga 344  Q
    |||||||| | ||||||||||||||||||| ||||| |  ||||| |||||||  ||||||||| ||||    
T  42177341 ttacacatttgataaggctgagaaacactattaaaataccaaaataccccctctgcagttaactgccga 42177273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 264 - 345
Target Start/End: Original strand, 53777101 - 53777182
Alignment:
Q  264 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaa 345  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||  || |||||||||||||||    
T  53777101 gagaattgctgtttacacatgttataaggctgagaaacactagtaaaagacgaaaatgcccctgcggcagttaactaccgaa 53777182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 272 - 374
Target Start/End: Complemental strand, 40900750 - 40900648
Alignment:
Q  272 ctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagttaactgc 371  Q
    ||||| |||||||||||| ||||||||||||| | |||||||  ||||||||||||||||||||||||| ||||||||| ||| | ||||| |||||| |    
T  40900750 ctgttgacacatgttatatggctgagaaacaccagtaaaagacaaaaatgccccctcgacagttaactatcgaaataataaactgactgcaattaactac 40900651  T
Q  372 cga 374  Q
    |||    
T  40900650 cga 40900648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 284 - 369
Target Start/End: Original strand, 40900224 - 40900309
Alignment:
Q  284 gttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagttaact 369  Q
    |||||| ||| ||||||||| | ||||||| ||||||||||| ||| |||||||||| ||||||||| |||||||| |||||||||    
T  40900224 gttatatggccgagaaacaccagtaaaagacgaaaatgccccatcggcagttaactatcgaaataataaaccggctacagttaact 40900309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 53777245 - 53777198
Alignment:
Q  264 gagaattgctgtttacacatgttataaggctgagaaacactaataaaa 311  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  53777245 gagaattgctgtttacacatgttataaggctgagaaacactagtaaaa 53777198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 31242891 - 31242833
Alignment:
Q  262 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaat 320  Q
    |||||||||||||||||||||||| | |||||||||||||||   ||||||| ||||||    
T  31242891 atgagaattgctgtttacacatgtgagaaggctgagaaacacatgtaaaagacgaaaat 31242833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 26791581 - 26791639
Alignment:
Q  262 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaat 320  Q
    |||||||||||||||||||||| | | |||||||||||||||   ||||||| ||||||    
T  26791581 atgagaattgctgtttacacatatgagaaggctgagaaacacatgtaaaagacgaaaat 26791639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 495
Target Start/End: Complemental strand, 40047792 - 40047754
Alignment:
Q  457 ctatgtttggttttgcatgcggcatgatgctcttattat 495  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  40047792 ctatgtttggttttgcatgcggcataatgctgttattat 40047754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 67573 - 67634
Alignment:
Q  278 acacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaact 339  Q
    |||||| | |||||||||||| || | | ||||| | |||||||||||||||||||||||||    
T  67573 acacatatcataaggctgagacacgcaagtaaaatacgaaaatgccccctcgacagttaact 67634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 9472790 - 9472867
Alignment:
Q  262 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaact 339  Q
    |||| |||||||| | |||||| | ||||||||||||||||||| ||||| |  ||||| |||||||  |||||||||    
T  9472790 atgaaaattgctgatgacacatttgataaggctgagaaacactagtaaaatactaaaataccccctctgcagttaact 9472867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 374
Target Start/End: Complemental strand, 46169276 - 46169227
Alignment:
Q  325 cctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 374  Q
    ||||| ||||||||| ||||| ||  ||||||||||||||||||||||||    
T  46169276 cctcgtcagttaactgccgaattatggaaccggctgcagttaactgccga 46169227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 349
Target Start/End: Complemental strand, 39666609 - 39666537
Alignment:
Q  277 tacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataa 349  Q
    ||||||| |||||||||||| ||||||  ||||| |||||||||  | || | ||||||||||| ||||||||    
T  39666609 tacacatattataaggctgaaaaacacatataaaggatgaaaatatctccactacagttaactatcgaaataa 39666537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 263 - 367
Target Start/End: Original strand, 5722990 - 5723094
Alignment:
Q  263 tgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgca 362  Q
    ||||||||||| || ||||||  |||||||||||||||||| | ||||||| |||||||||  |||  |||||||||| |||||||||||||||||||||    
T  5722990 tgagaattgcttttgacacataatataaggctgagaaacaccagtaaaagacgaaaatgccttctcagcagttaactatcgaaataatgaaccggctgca 5723089  T
Q  363 gttaa 367  Q
    |||||    
T  5723090 gttaa 5723094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 19758002 - 19757891
Alignment:
Q  264 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaat-aatgaaccggctgca 362  Q
    ||||||||||||| |||||| | ||| |||||| ||| ||  |||||||| |||||| | ||  |  ||||||||||||||| | || ||||||||||||    
T  19758002 gagaattgctgttgacacatatgatagggctgaaaaatacatataaaagacgaaaatactcctgcagcagttaactaccgaagttaaagaaccggctgca 19757903  T
Q  363 gttaactgccga 374  Q
    ||||||||||||    
T  19757902 gttaactgccga 19757891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 369
Target Start/End: Original strand, 25987122 - 25987177
Alignment:
Q  314 tgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagttaact 369  Q
    |||||||| ||| ||  |||||||||||||||||||||||| ||||||||||||||    
T  25987122 tgaaaatgtcccatcagcagttaactaccgaaataatgaactggctgcagttaact 25987177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 435
Target Start/End: Original strand, 25987232 - 25987269
Alignment:
Q  398 ccatcggcacttaagtgccgaggatctcaaaactacaa 435  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  25987232 ccatcggcacttaagtgccgaggatctcagaactacaa 25987269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 374
Target Start/End: Original strand, 117254 - 117305
Alignment:
Q  323 cccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 374  Q
    ||||||| ||||||||| ||||| ||  ||||||||||||||||||||||||    
T  117254 cccctcggcagttaactgccgaattatggaaccggctgcagttaactgccga 117305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 374
Target Start/End: Original strand, 17337644 - 17337695
Alignment:
Q  323 cccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 374  Q
    ||||||||||||||||| ||||| ||| |||| |||||||||||||| ||||    
T  17337644 cccctcgacagttaactgccgaattaaggaactggctgcagttaactaccga 17337695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 264 - 376
Target Start/End: Complemental strand, 10974860 - 10974748
Alignment:
Q  264 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcag 363  Q
    |||||||| |||| |||||| | ||| |||||| ||||||  |||||||| ||||||||| |  |||||||||||||| ||| ||| ||||||| |||||    
T  10974860 gagaattgttgttgacacatatgatagggctgaaaaacacatataaaagacgaaaatgcctctgcgacagttaactactgaagtaaggaaccggttgcag 10974761  T
Q  364 ttaactgccgacg 376  Q
    |||||||||||||    
T  10974760 ttaactgccgacg 10974748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 33205418 - 33205528
Alignment:
Q  264 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcag 363  Q
    |||| ||||||||||||||| | ||| |||||| ||||||   ||||||| ||||||||| |  || |||||| |||||||| |   |||||||||| ||    
T  33205418 gagagttgctgtttacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcctctgcggcagttacctaccgaagtttggaaccggctgtag 33205517  T
Q  364 ttaactgccga 374  Q
    |||||||||||    
T  33205518 ttaactgccga 33205528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 374
Target Start/End: Original strand, 18609056 - 18609138
Alignment:
Q  291 ggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 374  Q
    ||||||||||||||| |||   || |||||||||| | ||||||||||| ||||| ||   |||||||||||||||||||||||    
T  18609056 ggctgagaaacactagtaatttatcaaaatgcccctt-gacagttaactgccgaattatgaaaccggctgcagttaactgccga 18609138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 374
Target Start/End: Complemental strand, 26607512 - 26607461
Alignment:
Q  323 cccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 374  Q
    ||||||| ||||||||| ||||| ||  ||||||||||||||||||||||||    
T  26607512 cccctcggcagttaactgccgaattatggaaccggctgcagttaactgccga 26607461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 367
Target Start/End: Original strand, 21263308 - 21263406
Alignment:
Q  269 ttgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagttaa 367  Q
    |||||||||||| || | ||| |||||| ||||||   |||||||||||||| ||||  || ||||||||||||||| |   |||||| ||||||||||    
T  21263308 ttgctgtttacatatatgatagggctgaaaaacacatgtaaaagatgaaaatacccctgcggcagttaactaccgaagtttggaaccgactgcagttaa 21263406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 324 - 374
Target Start/End: Complemental strand, 37992626 - 37992576
Alignment:
Q  324 ccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 374  Q
    |||||||||||||||| ||||| ||   |||||||||||||||||||||||    
T  37992626 ccctcgacagttaactgccgaattatgaaaccggctgcagttaactgccga 37992576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 49875416 - 49875370
Alignment:
Q  323 cccctcgacagttaactaccgaaataatgaaccggctgcagttaact 369  Q
    ||||||||||||||||||||||| ||  |||||| ||||||||||||    
T  49875416 cccctcgacagttaactaccgaattatggaaccgactgcagttaact 49875370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 369
Target Start/End: Complemental strand, 15660365 - 15660260
Alignment:
Q  264 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcag 363  Q
    ||||||||||||| |||||| | ||| |||||| ||||||  ||||| || |||||||| |   || ||||||||||||||  |   |||||||||||||    
T  15660365 gagaattgctgttgacacatatgatagggctgaaaaacacatataaatgacgaaaatgctcatgcggcagttaactaccgatgtttggaaccggctgcag 15660266  T
Q  364 ttaact 369  Q
    ||||||    
T  15660265 ttaact 15660260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 49875001 - 49875046
Alignment:
Q  324 ccctcgacagttaactaccgaaataatgaaccggctgcagttaact 369  Q
    |||||||||||||||| ||||| ||  |||||||||||||||||||    
T  49875001 ccctcgacagttaactgccgaattatggaaccggctgcagttaact 49875046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 369
Target Start/End: Complemental strand, 52427631 - 52427527
Alignment:
Q  265 agaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagt 364  Q
    |||||||||||| ||| || | ||| | |||| ||||||   ||||||| ||||||||| |  | |||||||||||||||| |   ||||||||||||||    
T  52427631 agaattgctgttgacatatatgataggactgaaaaacacatgtaaaagacgaaaatgcctctgctacagttaactaccgaagtttggaaccggctgcagt 52427532  T
Q  365 taact 369  Q
    |||||    
T  52427531 taact 52427527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 263 - 374
Target Start/End: Original strand, 39742508 - 39742622
Alignment:
Q  263 tgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccga--aataat-gaaccggct 359  Q
    ||||||||||||||||||||||||||| ||||||||||||| | ||||| |  ||||| |||||||  ||||||||| ||||  || |||  ||||| ||    
T  39742508 tgagaattgctgtttacacatgttatagggctgagaaacaccagtaaaataccaaaataccccctctgcagttaactgccgaggaaaaataaaaccgact 39742607  T
Q  360 gcagttaactgccga 374  Q
    |||||||||||||||    
T  39742608 gcagttaactgccga 39742622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 302
Target Start/End: Original strand, 42098236 - 42098275
Alignment:
Q  263 tgagaattgctgtttacacatgttataaggctgagaaaca 302  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42098236 tgagaattgctgtttacacatgttataaggctgagaaaca 42098275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 339
Target Start/End: Complemental strand, 30966782 - 30966706
Alignment:
Q  263 tgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaact 339  Q
    ||||||||| ||| ||||||||||| | ||||||||||||||| |||||||  ||||| |||| ||| |||||||||    
T  30966782 tgagaattgttgtatacacatgttaaagggctgagaaacactagtaaaagaccaaaataccccttcggcagttaact 30966706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 262 - 374
Target Start/End: Complemental strand, 19228787 - 19228672
Alignment:
Q  262 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccga---aataatgaaccggc 358  Q
    |||| ||||| |||| |||||| | |||||||||||| |||| | ||||| | | ||||||||||||| ||||||||| ||||   | |||  ||||||     
T  19228787 atgaaaattgttgttgacacatttgataaggctgagacacacaagtaaaatacgtaaatgccccctcggcagttaactgccgatgaattaaaaaaccgga 19228688  T
Q  359 tgcagttaactgccga 374  Q
    ||||||||||||||||    
T  19228687 tgcagttaactgccga 19228672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 320
Target Start/End: Complemental strand, 6268159 - 6268106
Alignment:
Q  267 aattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaat 320  Q
    ||||||||| |||||||||||||||||||| ||| ||  |||||||| ||||||    
T  6268159 aattgctgtatacacatgttataaggctgaaaaatacctataaaagacgaaaat 6268106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 30966024 - 30966065
Alignment:
Q  262 atgagaattgctgtttacacatgttataaggctgagaaacac 303  Q
    |||||||||||||| ||||||||||| | |||||||||||||    
T  30966024 atgagaattgctgtatacacatgttaaagggctgagaaacac 30966065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 376
Target Start/End: Complemental strand, 35777087 - 35777042
Alignment:
Q  331 cagttaactaccgaaataatgaaccggctgcagttaactgccgacg 376  Q
    ||||||||||||||| |   ||||||||||||||||||||||||||    
T  35777087 cagttaactaccgaagtttggaaccggctgcagttaactgccgacg 35777042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 374
Target Start/End: Complemental strand, 2170631 - 2170581
Alignment:
Q  327 tcgacagttaactaccgaaat---aatgaaccggctgcagttaactgccga 374  Q
    |||||||||||||| ||||||   || ||||||||||||||||||||||||    
T  2170631 tcgacagttaactatcgaaattttaaagaaccggctgcagttaactgccga 2170581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 344
Target Start/End: Original strand, 13707357 - 13707437
Alignment:
Q  264 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccga 344  Q
    |||||||| |||| |||||||||||| || |||||||||| | ||||| |  ||||| |||||||  ||||||||| ||||    
T  13707357 gagaattgatgttcacacatgttatagggttgagaaacaccagtaaaataccaaaataccccctctgcagttaactgccga 13707437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 337
Target Start/End: Complemental strand, 21835320 - 21835245
Alignment:
Q  262 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaa 337  Q
    |||||||||||||  ||||||| | ||||||||||||||||||| ||||| |  ||||| |||||||  |||||||    
T  21835320 atgagaattgctgaatacacatttgataaggctgagaaacactagtaaaataccaaaataccccctctgcagttaa 21835245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 374
Target Start/End: Complemental strand, 44934564 - 44934513
Alignment:
Q  323 cccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 374  Q
    ||||||||||||||||||||||| ||   ||||||||||||||| |||||||    
T  44934564 cccctcgacagttaactaccgaattatgaaaccggctgcagttatctgccga 44934513  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 25994442 - 25994488
Alignment:
Q  323 cccctcgacagttaactaccgaaataatgaaccggctgcagttaact 369  Q
    ||||||||||||||||| ||||| ||  |||||||||||||||||||    
T  25994442 cccctcgacagttaactgccgaattatggaaccggctgcagttaact 25994488  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 43519898 - 43519944
Alignment:
Q  323 cccctcgacagttaactaccgaaataatgaaccggctgcagttaact 369  Q
    ||||||||||||||||| ||||| ||  |||||||||||||||||||    
T  43519898 cccctcgacagttaactgccgaattatggaaccggctgcagttaact 43519944  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 374
Target Start/End: Original strand, 40740903 - 40740953
Alignment:
Q  327 tcgacagttaactaccgaaat---aatgaaccggctgcagttaactgccga 374  Q
    ||||||||||||| |||||||   || ||||||||||||||||||||||||    
T  40740903 tcgacagttaactgccgaaattttaaagaaccggctgcagttaactgccga 40740953  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 41858518 - 41858562
Alignment:
Q  323 cccctcgacagttaactaccgaaataatgaaccggctgcagttaa 367  Q
    ||||||||||||||||| ||||| ||  |||||||||||||||||    
T  41858518 cccctcgacagttaactgccgaattatggaaccggctgcagttaa 41858562  T

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Target: scaffold1500 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1500
Description:

Target: scaffold1500; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 344
Target Start/End: Complemental strand, 886 - 818
Alignment:
Q  276 ttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccga 344  Q
    |||||||| | ||||||||||||||||||| ||||| |  ||||| |||||||  ||||||||| ||||    
T  886 ttacacatttgataaggctgagaaacactattaaaataccaaaataccccctctgcagttaactgccga 818  T

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Target: scaffold1379 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 370
Target Start/End: Complemental strand, 574 - 464
Alignment:
Q  263 tgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactacc---gaaataatgaaccggct 359  Q
    ||||||||| ||||||||||| | ||||| ||||||||||| | ||||| | ||   ||| |||||| ||||||||| ||   ||| |||| | ||||||    
T  574 tgagaattgatgtttacacatttgataagactgagaaacacgagtaaaatacgattttgctccctcggcagttaactgccgaagaattaataatccggct 475  T
Q  360 gcagttaactg 370  Q
    |||||||||||    
T  474 gcagttaactg 464  T

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