View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_high_13 (Length: 469)
Name: NF13044_high_13
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 264
Target Start/End: Original strand, 28009340 - 28009596
Alignment:
| Q |
6 |
gtagataatactcaattaaagaagcatctaaatataaacaaattcacagaccttatttttctagacaatattcatgaaccttaaaacactgctatgtaaa |
105 |
Q |
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| T |
28009340 |
gtagataatactcaattaaagaaacatctaaatataagcaaattcacaaaccttatttttctagacaatattcatgaaccttaaaacact--tatgtaaa |
28009437 |
T |
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| Q |
106 |
tataaatttcttgccgaacgtgnnnnnnnnnnnnggaggtgttacccaagattaagatgagatgattctaatatggatatatttgaaattaattccagaa |
205 |
Q |
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| T |
28009438 |
tataaatttcttgcccaacgtgtttttattttttggaggtgttacccaagattaagatgagatgattctaatatggatatatttgaaattaattccagag |
28009537 |
T |
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| Q |
206 |
tgtgggttcgaatcatgtattataaatacatcaacattcaaactcccattcatcttgtc |
264 |
Q |
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| T |
28009538 |
tgtgggttcgaatcaagtattataaatacatcaacattcaaactcccattcatcttgtc |
28009596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 327 - 449
Target Start/End: Original strand, 28009672 - 28009795
Alignment:
| Q |
327 |
agacattcattcattcaaattggacaaatacatagatcattagaaaattaagattgcaacaaactgt-aaaaagtgaatctgcaaacaattctacgacac |
425 |
Q |
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| T |
28009672 |
agacattcattcattcaaattggacaaatacatagatcattagaaaattaagattgcaacaagctgtaaaaaagtgaatttgcaaacaatcctacgacag |
28009771 |
T |
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| Q |
426 |
tttggttaataatatacaacgact |
449 |
Q |
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| T |
28009772 |
tttggttaataatatacaacgact |
28009795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 383
Target Start/End: Original strand, 32849100 - 32849148
Alignment:
| Q |
335 |
attcattcaaattggacaaatacatagatcattagaaaattaagattgc |
383 |
Q |
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| T |
32849100 |
attcattcaaattagacaaatacatagatcattgcaaatttaagattgc |
32849148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 392
Target Start/End: Original strand, 44527002 - 44527063
Alignment:
| Q |
331 |
attcattcattcaaattggacaaatacatagatcattagaaaattaagattgcaacaaactg |
392 |
Q |
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||||||||||||| ||| |||||||||||| ||||||| ||| |||| ||||| | |||||| |
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| T |
44527002 |
attcattcattcagattagacaaatacatatatcattacaaatttaaaattgctaaaaactg |
44527063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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