View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_high_18 (Length: 420)
Name: NF13044_high_18
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 149 - 410
Target Start/End: Original strand, 27483201 - 27483462
Alignment:
| Q |
149 |
atgaaattcaattcttttatgtatcagcacccgattcattctgtaaattttgtttgtatttcaggatggccgccaacttcagctactgggatgattgtgt |
248 |
Q |
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| T |
27483201 |
atgaaattcaattcttttatgtatcagcacccgattcattctgtaaattttgtttgtatttcaggatggccgccaacttcagctactgggatgattgtgt |
27483300 |
T |
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| Q |
249 |
tgatcctcaggatttagaggcaatgtggaatgtacctgaagtgagtgccgagtggttaaaagttggagaggaaagaggtcgaaaagttcatctctctcgc |
348 |
Q |
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| T |
27483301 |
tgatcctcaggatttagaggcaatgtggaatgtacctgaagtgagtgccgagtggttaaaagttggagaggaaagaggtcgaaaagttcatctctctcgc |
27483400 |
T |
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| Q |
349 |
gatcctgatggccagccatatttgacacagactgaaatgagggtactgcacatcaccctatg |
410 |
Q |
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| T |
27483401 |
gatcctgatggccagccatatttgacacagactgaaatgagggtactgcacatcaccctatg |
27483462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 27483108 - 27483203
Alignment:
| Q |
19 |
gtctacaccaccactaggataacccttgtgggttaattgaaaatttgtgttagatgagtttattcatatgatattttcttagctcctttattaatg |
114 |
Q |
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| T |
27483108 |
gtctacaccaccactaggataacccttgtgggttaattgaaaatttgtgttagatgagtttattcatatgatattttcttagctcctttattaatg |
27483203 |
T |
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