View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_high_19 (Length: 415)
Name: NF13044_high_19
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Original strand, 8872199 - 8872591
Alignment:
| Q |
18 |
aatactgaggttagtattgatggggttggatttcaaggtattgctggtgcaagtgcaactgattcaaggattgaagatggtgagaaaattgatgcagtac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8872199 |
aatactgaggttagtattgatggggttggatttcaaggtattgctggtgcaagtgcaactgattcaaggattgaagatggtgagaaaattgatgcagtac |
8872298 |
T |
|
| Q |
118 |
aaaaatttggagagtctactacaaatgttgccacaagttcaaactcaaacaaagacaagaaaaatattttggctccaactcttacaatggattatattaa |
217 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8872299 |
aaaaatttggagagtctactacaaatgttcccacaagttcaaactcaaacaaagacaagaaaaatattttggctccaactcttaccatggattatattaa |
8872398 |
T |
|
| Q |
218 |
taatataaagtttcacgttgaagaagaatcctccgattttgattatgaatcctctaaacttgatttgacacttaagctttatgagtcatctgaacttgat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8872399 |
taatataaagtttcacgttgaagaagaatcctccgattttgattatgaatcgtctaaacttgatttgacacttaaactttatgagtcatctgaacttgat |
8872498 |
T |
|
| Q |
318 |
ttgacgcttaagctttaaatagtgattttatattttgtacccattgtcactatgatttaaattcagtttttatagttttcctttcatctcact |
410 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8872499 |
ttgacgcttaagctttaaatacagattttatattttgtacccattgtcactatgatttaaattcagtttttatagttttcctttcatgtcact |
8872591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 8868930 - 8868544
Alignment:
| Q |
18 |
aatactgaggttagtattgatggggttggatttcaaggtattgctggtgcaagtgcaactgattcaaggattgaagatggtgagaaaattgatgcagtac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
8868930 |
aatactgaggttagtattgatggggttggatttcaaggtattggtggtgcaagtgcaactgattcaagggttgaagatggtgagaaaattgatgcaggac |
8868831 |
T |
|
| Q |
118 |
aaaaatttggagagtctactacaaatgttgccacaagttcaaactcaaacaaagacaagaaaaatattttggctccaactctt---acaatggattatat |
214 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| |||||||||||||| |||||||||||||||| ||||||||||| || || |||||||||| |
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| T |
8868830 |
aaaaatttggagagtctactaaaaatgttgtcacaggttcaaactcaaacggagacaagaaaaatattctggctccaactgttgttactgtggattatat |
8868731 |
T |
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| Q |
215 |
taataatataaagtttcacgttgaagaagaatcctccgattttgattatgaatcctctaaacttgatttgacacttaagctttatgagtcatctgaactt |
314 |
Q |
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| T |
8868730 |
taataatataaagtttcatgttgaagaagaatcctccgattttgattttgagtcctctaaacttgacttgacacttaagctttatgggtcatctgaactt |
8868631 |
T |
|
| Q |
315 |
gatttgacgcttaagctttaaatagtgattttatattttgtacccattgtcactatgatttaaattcagtttttatagttttccttt |
401 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||| |
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| T |
8868630 |
gatttgacgcttaagctttaaatacagattttatattttgtacccattgttgctaagatttaaattcagtttttatagtttttcttt |
8868544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 3156592 - 3156518
Alignment:
| Q |
119 |
aaaatttggagagtctactacaaatgttgccacaagttcaaactcaaacaaagacaagaaaaatattttggctcc |
193 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||| |||||||||||||||||| ||| ||| ||| |||| ||||||| |
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| T |
3156592 |
aaaattaggagattcttctacaaatgttgctgcaagttcaaactcaaacatagaaaagcaaattattgtggctcc |
3156518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 3167699 - 3167746
Alignment:
| Q |
119 |
aaaatttggagagtctactacaaatgttgccacaagttcaaactcaaa |
166 |
Q |
| |
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|||||| ||||| ||| ||||||||||||| ||||||||||||||||| |
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|
| T |
3167699 |
aaaattaggagattcttctacaaatgttgctacaagttcaaactcaaa |
3167746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 2023270 - 2023340
Alignment:
| Q |
123 |
tttggagagtctactacaaatgttgccacaagttcaaactcaaacaaagacaagaaaaatattttggctcc |
193 |
Q |
| |
|
|||| ||| ||| ||||||||||| | |||||||||||||||||| ||| ||||||| |||| ||||||| |
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| T |
2023270 |
tttgaagattcttctacaaatgttacaacaagttcaaactcaaacctagaaaagaaaattattatggctcc |
2023340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 159
Target Start/End: Original strand, 1744995 - 1745034
Alignment:
| Q |
120 |
aaatttggagagtctactacaaatgttgccacaagttcaa |
159 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||| |
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| T |
1744995 |
aaatttggagattcttctacaaatgttgccacaagttcaa |
1745034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 23852567 - 23852616
Alignment:
| Q |
119 |
aaaatttggagagtctactacaaatgttgccacaagttcaaactcaaaca |
168 |
Q |
| |
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|||||| ||||| ||| |||||||| |||| ||||||||||||||||||| |
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| T |
23852567 |
aaaattgggagattcttctacaaatattgctacaagttcaaactcaaaca |
23852616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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