View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_high_20 (Length: 414)
Name: NF13044_high_20
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 14 - 398
Target Start/End: Complemental strand, 27433495 - 27433110
Alignment:
| Q |
14 |
atgaataccattcgttgaattaagattcaaaccatccatagtaggctatatatatgtcaagaaacagag--caatttcatcaatcactaaacagaaaaac |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||| |
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| T |
27433495 |
atgaataccattcgttgaattaagattcaaaccatccatagtaggctatatatatgtcaagaagcagagagcaatttcatcaatcaccaaacagaaaaac |
27433396 |
T |
|
| Q |
112 |
tacaattgaaagagaaaatattgcaccaatattcacaagcctgcaaaacaagattaatcaagtcatatccaaaatgaagaacacccatgttgctttatgc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27433395 |
tacaattgaaagagaaaatattgcaccaatattcacaagcctgcaaaacaagattaatcaagtcatatccaaaatgaagaacacccatgttgctttatgc |
27433296 |
T |
|
| Q |
212 |
tttagcttggcattcctcttctatggtaatatatatcagtactcattcaactacattaattttccatatagttaataaattaattcatttagcttatttt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27433295 |
tttagcttggcattcctcttctatggtaatatatatcagtactcattcaactacattaattttccatatagttaataaattaattcatttagctta-ttt |
27433197 |
T |
|
| Q |
312 |
tattcctcttcatgtggttaataaattcatttgctcttctaatatgaacgtattttgcatttgtatgcagtggttggaggagctaag |
398 |
Q |
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| T |
27433196 |
tattcctcttcatgtggttaataaattcatttgctcttctaatatgaacgtattttgcatttgtatgcagcggttggaggagctaag |
27433110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 176 - 398
Target Start/End: Complemental strand, 27208246 - 27208030
Alignment:
| Q |
176 |
atatccaaaatgaagaacacccatgttgctttatgctttagcttggcattcctcttctatggtaatatatatcagtactcattcaactacattaattttc |
275 |
Q |
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| T |
27208246 |
atatccaaaatgaagtgcaaccgtgttgctttatgctttagctttgcattcctcttctatggta-tatatatcagtactca----actacattaattttc |
27208152 |
T |
|
| Q |
276 |
catatagttaataaattaattcatttagcttatttttattcctcttcatgtggttaataaattcatttgctcttctaatatgaacgtattttgcatttgt |
375 |
Q |
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|||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27208151 |
catatagttaatccattaattcatttagcttagttt-atttctcttcatgtggttaataaattcatttgctcttctaatatgaacgtatttttcatttgt |
27208053 |
T |
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| Q |
376 |
atgcagtggttggaggagctaag |
398 |
Q |
| |
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| T |
27208052 |
atgcagtggttggaggagctaag |
27208030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 259 - 398
Target Start/End: Complemental strand, 27455396 - 27455258
Alignment:
| Q |
259 |
caactacattaattttccatatagttaataaattaattcatttagcttatttttattcctcttcatgtggttaataaattcatttgctcttctaatatga |
358 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| |||||| | |
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| T |
27455396 |
caactacattaattttccatatagtaaatcaattaattcatttagcttagttt-attgctcttcatgtggttaataaattcatttgctctgataatataa |
27455298 |
T |
|
| Q |
359 |
acgtattttgcatttgtatgcagtggttggaggagctaag |
398 |
Q |
| |
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|| |||||||||||| || |||| ||||||||||||||| |
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| T |
27455297 |
acatattttgcatttctaatcagtagttggaggagctaag |
27455258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 27443128 - 27443363
Alignment:
| Q |
18 |
ataccattcgttgaattaagattcaaaccatccatagtag---gctatatat--atgtcaagaaacagag--caatttcatcaatcact---aaacagaa |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| || ||||||||| |||||| ||| ||||| ||| |||||||||||| |||||| | |
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| T |
27443128 |
ataccattcgttgaattaagattcaaaccatcgatagaagaaggctatatatttatgtcatgaagcagagaacaacttcatcaatcaccttcaaacagca |
27443227 |
T |
|
| Q |
108 |
aaactacaattgaaagagaaaatattgcaccaatattcacaagcctgcaaaacaagattaatcaagtcatatccaaaatgaagaacacccatgttgcttt |
207 |
Q |
| |
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|| ||||||| ||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||| | ||| | ||||||| | |
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| T |
27443228 |
aa-ctacaatcgaaagagaaaata-----------ttcacaagcctgcaaaacaagattcatcaagccatatccaaaatgacaagcactcgtgttgctct |
27443315 |
T |
|
| Q |
208 |
atgctttagcttggcattcctcttctatggtaatatatatcagtactca |
256 |
Q |
| |
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|||| |||| || |||||||||||||||||| |||||||||| |||||| |
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| T |
27443316 |
atgccttagttttgcattcctcttctatggt-atatatatcactactca |
27443363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 258 - 333
Target Start/End: Complemental strand, 20952851 - 20952777
Alignment:
| Q |
258 |
tcaactacattaattttccatatagttaataaattaattcatttagcttatttttattcctcttcatgtggttaat |
333 |
Q |
| |
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| T |
20952851 |
tcaactacactaattttccatatagttaataaattaattcatttagctta-gtttatccctcttcatgcggttaat |
20952777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 292
Target Start/End: Complemental strand, 27221707 - 27221442
Alignment:
| Q |
22 |
cattcgttgaattaagattcaaaccatcc-atagtaggctatatatatgtcaagaaacagag--caatttcatcaatcact---aaacagaaaaactaca |
115 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||| | |||||||||||||| ||| ||||| ||| ||||||||||||| |||||| ||| ||||| |
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| T |
27221707 |
cattcgttgaattacgattcaacccatcggatagaaatctatatatatgtcacgaagcagagaacaacttcatcaatcacttacaaacagcaaa-ctaca |
27221609 |
T |
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| Q |
116 |
attgaaagagaaaatattgcaccaatattcacaagcctgcaaaacaagattaatc--aagtcatatccaaaatgaagaacacccatgttgctttatgctt |
213 |
Q |
| |
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|| ||||||||||| |||||||||||||||||||||||||| ||| ||| |||||||||||||| | ||||| |||||| ||||| | |
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| T |
27221608 |
atcgaaagagaaaa-----------tattcacaagcctgcaaaacaagattcatcaaaagccatatccaaaatgacaagcacccgcgttgctctatgcct |
27221520 |
T |
|
| Q |
214 |
tagcttggcattcctcttctatggta---atatatatcagtactcattcaactacattaattttccatatagttaataaatt |
292 |
Q |
| |
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||| || ||||||||||||||||||| | |||||||| || ||| |||||||||||||||||||||| ||||| |||| |
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|
| T |
27221519 |
tagttttgcattcctcttctatggtacgtacatatatcaata--cat--aactacattaattttccatataattaatcaatt |
27221442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 140 - 292
Target Start/End: Complemental strand, 27215633 - 27215480
Alignment:
| Q |
140 |
atattcacaagcctgcaaaacaagattaatc--aagtcatatccaaaatgaagaacacccatgttgctttatgctttagcttggcattcctcttctatgg |
237 |
Q |
| |
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||||||||||||||||||||||||||||||| ||| |||||||||||||| | ||||| ||||||| | ||| |||| || |||||||||||||| || |
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| T |
27215633 |
atattcacaagcctgcaaaacaagattaatcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacgg |
27215534 |
T |
|
| Q |
238 |
ta---atatatatcagtactcattcaactacattaattttccatatagttaataaatt |
292 |
Q |
| |
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|| | |||||||| || ||| |||||||||||||||||||||| ||||| |||| |
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| T |
27215533 |
tacgtacatatatcaata--cat--aactacattaattttccatataattaatcaatt |
27215480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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