View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13044_high_21 (Length: 411)

Name: NF13044_high_21
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13044_high_21
NF13044_high_21
[»] chr1 (9 HSPs)
chr1 (18-409)||(23896789-23897180)
chr1 (101-234)||(25611722-25611855)
chr1 (139-238)||(24512229-24512328)
chr1 (139-225)||(24635576-24635662)
chr1 (101-209)||(24234114-24234222)
chr1 (139-243)||(24247307-24247411)
chr1 (136-202)||(45693646-45693712)
chr1 (139-229)||(51831606-51831696)
chr1 (139-179)||(51763695-51763735)
[»] scaffold0015 (1 HSPs)
scaffold0015 (136-226)||(41144-41234)
[»] chr7 (1 HSPs)
chr7 (101-231)||(1421900-1422030)
[»] chr3 (2 HSPs)
chr3 (139-206)||(1941334-1941401)
chr3 (133-185)||(3745216-3745268)
[»] scaffold1004 (1 HSPs)
scaffold1004 (151-209)||(1397-1455)
[»] chr8 (1 HSPs)
chr8 (133-206)||(31145157-31145230)


Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 23896789 - 23897180
Alignment:
Q  18 aattgagtaagacattacagataactcttttcttgacgagtgcaatgagcttgtgacgaggtgtttgcgtttggttgataagagaaggtgtttcttgaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23896789 aattgagtaagacattacagataactcttttcttgacgagtgcaatgagcttgtgacgaggtgtttgcgtttggttgataagagaaggtgtttcttgaag 23896888  T
Q  118 aatttctgatccttcgatattagagaattccatgacttgcagacgcagcagaattgtaggaggaacttaacggggagtctacacaggatttcaaccacga 217  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||| |||||||||||||||||||    
T  23896889 aatttctgatccttcgagattagagaattccatgacttgcagacgcagcggaattgtaggaggaacttgacagggagtctgcacaggatttcaaccacga 23896988  T
Q  218 gatcaaacggaatatgagtcaccggcgcagggagaagccgctgcctcttgtttgcggtcgtttccaccatcagtgaatgggaagaataagagggtgcgtc 317  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23896989 gatcaaacggaatatgagtcaccggtgcagggagaagccgctgcctcttgtttgcgatcgtttccaccatcagtgaatgggaagaataagagggtgcgtc 23897088  T
Q  318 gttatcgtttgagaatgaagaattccaaaactcgactggaagtgaatcactatgtgttagggtttcggtggaggtggtcgctctgtgctgct 409  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  23897089 gtaatcgtttgagaatgaagaattccaaaactcgactggaagtgaatcactatgtgttagggtttcggtggaggtggtcgctcagtgttgct 23897180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 101 - 234
Target Start/End: Original strand, 25611722 - 25611855
Alignment:
Q  101 gaaggtgtttcttgaagaatttctgatccttcgatattagagaattccatgacttgcagacgcagcagaattgtaggaggaacttaacggggagtctaca 200  Q
    |||||||||||||||  || ||  |||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || ||||| |||||    
T  25611722 gaaggtgtttcttgacaaaattgggatcattcgatattagagaattccatgacttgcagacgcaacagaattgaaggaggaacttgaccgggagcctaca 25611821  T
Q  201 caggatttcaaccacgagatcaaacggaatatga 234  Q
     ||||||||||| |||| ||||||||||| ||||    
T  25611822 aaggatttcaacgacgacatcaaacggaacatga 25611855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 24512328 - 24512229
Alignment:
Q  139 agagaattccatgacttgcagacgcagcagaattgtaggaggaacttaacggggagtctacacaggatttcaaccacgagatcaaacggaatatgagtca 238  Q
    |||||||||||||||||||||||||| | |||||| | |||||||||  | ||||||||||| || ||||||  ||||||||||||| ||||||||||||    
T  24512328 agagaattccatgacttgcagacgcatccgaattgcacgaggaacttggcagggagtctacatagaatttcagtcacgagatcaaacagaatatgagtca 24512229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 24635576 - 24635662
Alignment:
Q  139 agagaattccatgacttgcagacgcagcagaattgtaggaggaacttaacggggagtctacacaggatttcaaccacgagatcaaac 225  Q
    |||||||||||||||||||||||||| |||||||| | |||||||||  | ||||||||||| || ||||||  || ||||||||||    
T  24635576 agagaattccatgacttgcagacgcatcagaattgcatgaggaacttggcagggagtctacatagaatttcagtcatgagatcaaac 24635662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 209
Target Start/End: Original strand, 24234114 - 24234222
Alignment:
Q  101 gaaggtgtttcttgaagaatttctgatccttcgatattagagaattccatgacttgcagacgcagcagaattgtaggaggaacttaacggggagtctaca 200  Q
    |||||||||| |||  ||||||  |||| || || || || |||||||||||||| ||||| |||| ||||||||||||||| || || |||||||||||    
T  24234114 gaaggtgttttttggtgaatttaggatcattagagataagcgaattccatgacttacagacacagcggaattgtaggaggaatttgacagggagtctaca 24234213  T
Q  201 caggatttc 209  Q
    || ||||||    
T  24234214 caagatttc 24234222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 24247307 - 24247411
Alignment:
Q  139 agagaattccatgacttgcagacgcagcagaattgtaggaggaacttaacggggagtctacacaggatttcaaccacgagatcaaacggaatatgagtca 238  Q
    |||||||||||  ||||||||||||||| |||| ||| |||  |||| || |||||||| |||||||||||| |||||| ||| |||||||  |||| ||    
T  24247307 agagaattccacaacttgcagacgcagcggaatcgtaagagacacttgacagggagtctgcacaggatttcagccacgacatccaacggaagttgagcca 24247406  T
Q  239 ccggc 243  Q
    |||||    
T  24247407 ccggc 24247411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 45693646 - 45693712
Alignment:
Q  136 attagagaattccatgacttgcagacgcagcagaattgtaggaggaacttaacggggagtctacaca 202  Q
    |||||||||||||| |||||||| | ||||| || |||||| || ||||| || |||||||||||||    
T  45693646 attagagaattccacgacttgcatatgcagcggagttgtagaagaaacttgaccgggagtctacaca 45693712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 51831696 - 51831606
Alignment:
Q  139 agagaattccatgacttgcagacgcagcagaattgtaggaggaacttaacggggagtctacacaggatttcaaccacgagatcaaacggaa 229  Q
    ||||| ||||||||||||||||| || | || ||| ||||| || || || ||||| |  ||||||||| | |||||||||||||||||||    
T  51831696 agagagttccatgacttgcagacacaacggagttgaaggagaaatttcactgggagccggcacaggattactaccacgagatcaaacggaa 51831606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 51763695 - 51763735
Alignment:
Q  139 agagaattccatgacttgcagacgcagcagaattgtaggag 179  Q
    |||||||||||||||||||||||||| |||| ||| |||||    
T  51763695 agagaattccatgacttgcagacgcaacagagttgaaggag 51763735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 41144 - 41234
Alignment:
Q  136 attagagaattccatgacttgcagacgcagcagaattgtaggaggaacttaacggggagtctacacaggatttcaaccacgagatcaaacg 226  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| || || ||||||| ||| ||||||||| |||| ||||||||||    
T  41144 attagagaattccatgacttgcagacgcaacggaattgtaggaggaatttcacagggagtcgacataggatttcagccacaagatcaaacg 41234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 1421900 - 1422030
Alignment:
Q  101 gaaggtgtttcttgaagaatttctgatccttcgatattagagaattccatgacttgcagacgcagcagaattgtaggaggaacttaacggggagtctaca 200  Q
    |||||||||| |||  ||||||  |||| || || |||||| ||||||| ||||| |||||||| | ||||||||||||||| || || |||||||||||    
T  1421900 gaaggtgttttttggcgaatttgggatcatttgagattagaaaattccacgacttacagacgcaacggaattgtaggaggaatttcactgggagtctaca 1421999  T
Q  201 caggatttcaaccacgagatcaaacggaata 231  Q
    || ||||||   |||||||||||||||||||    
T  1422000 caagatttctttcacgagatcaaacggaata 1422030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 1941334 - 1941401
Alignment:
Q  139 agagaattccatgacttgcagacgcagcagaattgtaggaggaacttaacggggagtctacacaggat 206  Q
    ||||||||||| |||||||| ||||| | |||||| ||||| | ||| |||||||||||||| |||||    
T  1941334 agagaattccacgacttgcaaacgcaccggaattgaaggagaagcttcacggggagtctacagaggat 1941401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 3745268 - 3745216
Alignment:
Q  133 gatattagagaattccatgacttgcagacgcagcagaattgtaggaggaactt 185  Q
    |||||||||||||||||||||||||| || || | |||||| |||| ||||||    
T  3745268 gatattagagaattccatgacttgcaaacacatcggaattgaaggatgaactt 3745216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1004 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 1455 - 1397
Alignment:
Q  151 gacttgcagacgcagcagaattgtaggaggaacttaacggggagtctacacaggatttc 209  Q
    ||||||||||||||||  ||||| ||||| || || ||||| |||||||||||||||||    
T  1455 gacttgcagacgcagcgaaattgaaggagtaatttcacgggaagtctacacaggatttc 1397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 31145157 - 31145230
Alignment:
Q  133 gatattagagaattccatgacttgcagacgcagcagaattgtaggaggaacttaacggggagtctacacaggat 206  Q
    ||||| |||||||||||||||||||| || ||   |||||||| |||||| || || ||||||||||| |||||    
T  31145157 gatataagagaattccatgacttgcaaacacactggaattgtatgaggaatttcacagggagtctacagaggat 31145230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University