View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_high_31 (Length: 299)
Name: NF13044_high_31
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 280
Target Start/End: Complemental strand, 1063294 - 1063022
Alignment:
| Q |
6 |
tacaaaacaaccaagtacacaaaatacttaaaatctaaaagctacaagtctacgtcacatcacggacgcgccaattataaggcaacacaaaatggcttaa |
105 |
Q |
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| T |
1063294 |
tacaaaacaaccaagtatacaaaatactcaaattctaaaaactacaagtctacgtcacatcacggacgcgccaattataaggcaacacaaaatcgcttaa |
1063195 |
T |
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| Q |
106 |
acataaacaatttcgaacggatattgcatagtttacaattctacttaggattcagatcggcaaggcaacaaatcgtagtatttcagaattctgatcaaga |
205 |
Q |
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| T |
1063194 |
acataaacaatttcgaacggatattgca--gtttacaattctacttaggattaagatcggcaagacaacaaatcgtagtatttcagaattctgatcaaga |
1063097 |
T |
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| Q |
206 |
ttttaataacaatgctactgcagctctaatggcaaaaatttcaatctgaaaagcttctaacctgttattgaagga |
280 |
Q |
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| T |
1063096 |
ttttaataacaatgctactgcagctctaatggcaaaaatttcaatctgaaaaacttctaacctgttattgaagga |
1063022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 162
Target Start/End: Complemental strand, 2793926 - 2793827
Alignment:
| Q |
63 |
catcacggacgcgccaattataaggcaacacaaaatggcttaaacataaacaatttcgaacggatattgcatagtttacaattctacttaggattcagat |
162 |
Q |
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| T |
2793926 |
catcacgaacgcgccaattataaggcagaacaaaatcgcttaaacataaacgattttgaacagactttgcatagtttaggattccacttaagattcagat |
2793827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 27676919 - 27676977
Alignment:
| Q |
26 |
aaaatacttaaaatctaaaagctacaagtctacgtcacatcacggacgcgccaattata |
84 |
Q |
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| T |
27676919 |
aaaatactcaaaatctagatcctacaagcctacatcacatcacgaacgcgccaattata |
27676977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 11321296 - 11321376
Alignment:
| Q |
9 |
aaaacaaccaagtacacaaaatacttaaaatctaaaagctacaagtctacgtcacatcacggacgcgccaattataaggca |
89 |
Q |
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||||||||||||| |||||||||| |||| ||| | |||||||| |||| |||||||||| |||| ||||||||||||| |
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| T |
11321296 |
aaaacaaccaagtctacaaaatactcaaaacctagatgctacaagcctacatcacatcacgaacgcttcaattataaggca |
11321376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 17768397 - 17768337
Alignment:
| Q |
105 |
aacataaacaatttcgaacggatattgcatagtttacaattctacttaggattcagatcgg |
165 |
Q |
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|||||||| ||||||||| ||| |||||||||||| ||||| || |||||||||||||| |
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| T |
17768397 |
aacataaatgatttcgaacagattttgcatagtttaggattctgctcaggattcagatcgg |
17768337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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