View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13044_high_35 (Length: 279)

Name: NF13044_high_35
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13044_high_35
NF13044_high_35
[»] chr8 (2 HSPs)
chr8 (1-261)||(9510680-9510940)
chr8 (1-261)||(6245011-6245285)
[»] chr1 (5 HSPs)
chr1 (5-261)||(26510339-26510609)
chr1 (37-182)||(5808642-5808801)
chr1 (121-201)||(13867857-13867937)
chr1 (154-261)||(45795275-45795382)
chr1 (128-201)||(27393679-27393752)
[»] chr3 (3 HSPs)
chr3 (119-261)||(34829435-34829577)
chr3 (5-92)||(34829307-34829394)
chr3 (121-201)||(40513748-40513828)
[»] chr2 (2 HSPs)
chr2 (122-234)||(11196370-11196482)
chr2 (122-208)||(32624373-32624459)
[»] chr4 (4 HSPs)
chr4 (122-208)||(20544104-20544190)
chr4 (121-261)||(43516712-43516852)
chr4 (1-54)||(27300049-27300102)
chr4 (133-204)||(19120107-19120178)
[»] chr7 (2 HSPs)
chr7 (121-208)||(26855731-26855818)
chr7 (121-201)||(35213651-35213731)
[»] chr6 (2 HSPs)
chr6 (121-208)||(14687043-14687130)
chr6 (123-204)||(26513744-26513825)
[»] chr5 (1 HSPs)
chr5 (134-175)||(15862708-15862749)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 9510680 - 9510940
Alignment:
Q  1 caacacctgatatgatgccacaatgtgtcgaaagtggcgcaatgaagaaataagtgtgtcgcagactcttccatgccccaacctgcaacacataacactg 100  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9510680 caacacctgatatgatgccacaatgtactgaaagtggcgcaatgaagaaataagtgtgtcgcagactcttccatgccccaacctgcaacacataacgctg 9510779  T
Q  101 cttcagtatcgatcacacttattcttagtcgacaacctgtctcgcaacaaccgccaagcaaagatagaaaccttttgcggcacctgcttatgccagataa 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||    
T  9510780 cttcagtatcgatcacgcttattcttagtcgacaacctgtctcgcaacaaccgtcaagcaaagatagaaacctttaacggcacctgcttatgccagataa 9510879  T
Q  201 gatctcccgtagtaacatcttgaggatcagcctgcgttgtcagttgttcatagacacctct 261  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9510880 gatctcccgtagtaacatcttgaggatcagcttgcgttgtcagttgttcatagacacctct 9510940  T

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Target: chr8; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 6245011 - 6245285
Alignment:
Q  1 caacacctgatatgatgccacaatgtgtcgaaagtggcgcaatgaagaaataagtgtgtcgcagactcttccatgccccaacctgcaacacataacactg 100  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||| |||    
T  6245011 caacacctgatatgatgccacaatgtaccgaaagtggcgcaatgaagaaataagtgtgtcgtggactcttccatgccgcaacctgcaacacataacgctg 6245110  T
Q  101 cttcagtatcgatcacac--------------ttattcttagtcgacaacctgtctcgcaacaaccgccaagcaaagatagaaaccttttgcggcacctg 186  Q
    |||||| ||||||||| |              ||||||||||||  |||||| ||||||| ||| |||||||||||||||||||||||| | ||||||||    
T  6245111 cttcagcatcgatcacgccgcgcctcagaagattattcttagtcagcaacctatctcgcatcaatcgccaagcaaagatagaaacctttagtggcacctg 6245210  T
Q  187 cttatgccagataagatctcccgtagtaacatcttgaggatcagcctgcgttgtcagttgttcatagacacctct 261  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  6245211 cttatgccaaataagatctcccgtagtaacatcttgaggaacagcctgcattgtcagttgttcatagacacctct 6245285  T

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Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 261
Target Start/End: Complemental strand, 26510609 - 26510339
Alignment:
Q  5 acctgatatgatgccacaatgtgtcgaaagtggcgcaatgaagaaataagtgtgtcgcagactcttccatgccccaacctgcaacacataacactgcttc 104  Q
    ||||||||||||||||||||||  ||||| |||| ||||||| ||| ||||| | ||||||||||||| |||| || |||| |||||| |  ||||||||    
T  26510609 acctgatatgatgccacaatgtaccgaaaatggcacaatgaataaacaagtgaggcgcagactcttccttgccgcatcctgtaacacacataactgcttc 26510510  T
Q  105 agtatcgatcacac--------------ttattcttagtcgacaacctgtctcgcaacaaccgccaagcaaagatagaaaccttttgcggcacctgctta 190  Q
     |||| ||| || |              ||||||||||||| ||||||||| ||||||||||| ||||||||||| || |||||  ||||||| ||||||    
T  26510509 ggtattgattactccacgtctcataagattattcttagtcggcaacctgtcccgcaacaaccgtcaagcaaagatggagaccttcagcggcacttgctta 26510410  T
Q  191 tgccagataagatctcccgtagtaacatcttgaggatcagcctgcgttgtcagttgttcatagacacctct 261  Q
    |||||||||||||||||| ||||| ||||| ||||||||| ||| ||||||||||||| ||||| ||||||    
T  26510409 tgccagataagatctcccatagtaccatctggaggatcagtctgagttgtcagttgtttatagaaacctct 26510339  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 182
Target Start/End: Original strand, 5808642 - 5808801
Alignment:
Q  37 gcgcaatgaagaaataagtgtgtcgcagactcttccatgccccaacctgcaacacataacactgcttcagtatcgatcacac--------------ttat 122  Q
    ||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||| || |||||  ||||||||| |              ||||    
T  5808642 gcgcaatgaagaaataagtgtgtcgtagactctttcatgccgcaacctgcaacacataacgctacttcaacatcgatcacgccgcgcctcagaagattat 5808741  T
Q  123 tcttagtcgacaacctgtctcgcaacaaccgccaagcaaagatagaaaccttttgcggca 182  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5808742 tcttagtcggcaacctgtctcgcaacaaccgccaagcaaagatagaaacctttagcggca 5808801  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 13867937 - 13867857
Alignment:
Q  121 attcttagtcgacaacctgtctcgcaacaaccgccaagcaaagatagaaaccttttgcggcacctgcttatgccagataag 201  Q
    ||||||||||| |||||| || || ||||| | ||||||||| || ||||||||  |||||||||| ||||||||||||||    
T  13867937 attcttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataag 13867857  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 45795275 - 45795382
Alignment:
Q  154 ccaagcaaagatagaaaccttttgcggcacctgcttatgccagataagatctcccgtagtaacatcttgaggatcagcctgcgttgtcagttgttcatag 253  Q
    ||||||||| || ||||||||  |||||||||| |||||||| ||||| |||||  | | | ||||| |||| | | |||| | ||||||||||| ||||    
T  45795275 ccaagcaaaaatggaaaccttaagcggcacctgattatgccaaataaggtctccaatggaagcatctggaggttgaacctgagctgtcagttgttgatag 45795374  T
Q  254 acacctct 261  Q
    ||||||||    
T  45795375 acacctct 45795382  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 27393752 - 27393679
Alignment:
Q  128 gtcgacaacctgtctcgcaacaaccgccaagcaaagatagaaaccttttgcggcacctgcttatgccagataag 201  Q
    |||||||||||||||||||| || | ||||||||  ||||| |||||    || ||||||||||||||||||||    
T  27393752 gtcgacaacctgtctcgcaaaaatcaccaagcaagaatagagaccttcaagggtacctgcttatgccagataag 27393679  T

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Target: chr3 (Bit Score: 87; Significance: 9e-42; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 119 - 261
Target Start/End: Original strand, 34829435 - 34829577
Alignment:
Q  119 ttattcttagtcgacaacctgtctcgcaacaaccgccaagcaaagatagaaaccttttgcggcacctgcttatgccagataagatctcccgtagtaacat 218  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||| || |||||  || ||||||||||||||||||||||||||||| ||||| |||    
T  34829435 ttattcttaatcgacaacctgtcccgcaacaaccgccaagcaaagatggagaccttcagcagcacctgcttatgccagataagatctcccatagtaccat 34829534  T
Q  219 cttgaggatcagcctgcgttgtcagttgttcatagacacctct 261  Q
     | ||||||||||||| ||| ||||||||| ||||||||||||    
T  34829535 atggaggatcagcctgagttttcagttgttgatagacacctct 34829577  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 34829307 - 34829394
Alignment:
Q  5 acctgatatgatgccacaatgtgtcgaaagtggcgcaatgaagaaataagtgtgtcgcagactcttccatgccccaacctgcaacaca 92  Q
    ||||||||||||||||||||||   ||||||||| ||||||| ||| ||||| | ||||||||||||| |||| || |||| ||||||    
T  34829307 acctgatatgatgccacaatgtactgaaagtggcacaatgaataaacaagtgaggcgcagactcttccttgccgcaccctgtaacaca 34829394  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 40513828 - 40513748
Alignment:
Q  121 attcttagtcgacaacctgtctcgcaacaaccgccaagcaaagatagaaaccttttgcggcacctgcttatgccagataag 201  Q
    ||||||||||| |||||| || || ||||| | ||||||||| || ||||||||  |||||||||| ||||||||||||||    
T  40513828 attcttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataag 40513748  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 234
Target Start/End: Original strand, 11196370 - 11196482
Alignment:
Q  122 ttcttagtcgacaacctgtctcgcaacaaccgccaagcaaagatagaaaccttttgcggcacctgcttatgccagataagatctcccgtagtaacatctt 221  Q
    |||||||||| |||||| ||||||||||| ||||||| ||| || ||||||||  |||||||||||||||||||||||||||||||  |||||||||||     
T  11196370 ttcttagtcggcaacctatctcgcaacaatcgccaagtaaaaatggaaaccttcagcggcacctgcttatgccagataagatctcctatagtaacatctg 11196469  T
Q  222 gaggatcagcctg 234  Q
    |||| ||||||||    
T  11196470 gaggttcagcctg 11196482  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 32624373 - 32624459
Alignment:
Q  122 ttcttagtcgacaacctgtctcgcaacaaccgccaagcaaagatagaaaccttttgcggcacctgcttatgccagataagatctccc 208  Q
    |||||||||| |||||| |||| ||| || |||||| |||| || ||||||||  ||||||||||||||||||| |||| |||||||    
T  32624373 ttcttagtcggcaacctatctctcaataatcgccaaacaaaaatggaaaccttcagcggcacctgcttatgccatataaaatctccc 32624459  T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 20544104 - 20544190
Alignment:
Q  122 ttcttagtcgacaacctgtctcgcaacaaccgccaagcaaagatagaaaccttttgcggcacctgcttatgccagataagatctccc 208  Q
    |||||||||| |||||| |||||||| || ||||||| ||| || ||||||||  ||||||||||||||||||| ||||||||||||    
T  20544104 ttcttagtcggcaacctatctcgcaataatcgccaagtaaaaatggaaaccttcagcggcacctgcttatgccatataagatctccc 20544190  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 261
Target Start/End: Complemental strand, 43516852 - 43516712
Alignment:
Q  121 attcttagtcgacaacctgtctcgcaacaaccgccaagcaaagatagaaaccttttgcggcacctgcttatgccagataagatctcccgtagtaacatct 220  Q
    ||||||||||| |||||| || |  ||||| | ||||||||| || ||||||||  |||||||||| ||||||||||||||||||||  | ||| |||||    
T  43516852 attcttagtcggcaacctatcccataacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataagatctccaatggtagcatct 43516753  T
Q  221 tgaggatcagcctgcgttgtcagttgttcatagacacctct 261  Q
     |||| | | |||| | |||| |||||| ||||||||||||    
T  43516752 ggaggttgaacctgagctgtcggttgttgatagacacctct 43516712  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27300049 - 27300102
Alignment:
Q  1 caacacctgatatgatgccacaatgtgtcgaaagtggcgcaatgaagaaataag 54  Q
    ||||| ||||||| ||||||||||||  |||||||||||||| |||||||||||    
T  27300049 caacatctgatataatgccacaatgtaccgaaagtggcgcaacgaagaaataag 27300102  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 19120107 - 19120178
Alignment:
Q  133 caacctgtctcgcaacaaccgccaagcaaagatagaaaccttttgcggcacctgcttatgccagataagatc 204  Q
    ||||||||| |||| ||||||||||||||| || ||||||||    || |||||||||||||||| ||||||    
T  19120107 caacctgtcccgcagcaaccgccaagcaaaaatggaaaccttcataggaacctgcttatgccagacaagatc 19120178  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 26855731 - 26855818
Alignment:
Q  121 attcttagtcgacaacctgtctcgcaacaaccgccaagcaaagatagaaaccttttgcggcacctgcttatgccagataagatctccc 208  Q
    ||||||||||| |||||| || ||||| || ||||||||||| || ||||||||  ||||||||||||||||||| ||||| ||||||    
T  26855731 attcttagtcggcaacctatcacgcaataatcgccaagcaaaaatggaaaccttgagcggcacctgcttatgccatataaggtctccc 26855818  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 35213651 - 35213731
Alignment:
Q  121 attcttagtcgacaacctgtctcgcaacaaccgccaagcaaagatagaaaccttttgcggcacctgcttatgccagataag 201  Q
    ||||||||||| |||||| || || ||||| |  |||||||| || ||||||||  ||||||| || ||||||||||||||    
T  35213651 attcttagtcggcaacctatcccgtaacaatcttcaagcaaaaatggaaaccttaagcggcacttgattatgccagataag 35213731  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 14687130 - 14687043
Alignment:
Q  121 attcttagtcgacaacctgtctcgcaacaaccgccaagcaaagatagaaaccttttgcggcacctgcttatgccagataagatctccc 208  Q
    ||||||||||| |||||| || ||||| || ||||||||||| || ||||||||  ||||||||||||||||||| ||||| ||||||    
T  14687130 attcttagtcggcaacctatcacgcaataatcgccaagcaaaaatggaaaccttaagcggcacctgcttatgccatataaggtctccc 14687043  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 204
Target Start/End: Original strand, 26513744 - 26513825
Alignment:
Q  123 tcttagtcgacaacctgtctcgcaacaaccgccaagcaaagatagaaaccttttgcggcacctgcttatgccagataagatc 204  Q
    |||| |||| |||||| || ||||||||| |||||||||| || ||||||||| | || |||||||||||||| | ||||||    
T  26513744 tcttggtcggcaacctatcccgcaacaactgccaagcaaaaatggaaacctttagaggaacctgcttatgccaaacaagatc 26513825  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 15862749 - 15862708
Alignment:
Q  134 aacctgtctcgcaacaaccgccaagcaaagatagaaaccttt 175  Q
    ||||||||||| | |||||||||||| |||||||||||||||    
T  15862749 aacctgtctcgaagcaaccgccaagctaagatagaaaccttt 15862708  T

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