View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_high_37 (Length: 272)
Name: NF13044_high_37
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 22046729 - 22046480
Alignment:
| Q |
17 |
gcatggaagttgatgtcaagattcttaagagnnnnnnnnnnnnnnggacatggactgagtttggagatcactggaatattgtttgtcatcttaacaactt |
116 |
Q |
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| T |
22046729 |
gcatggaagttgatgtcaagattcttaagagaaaaaaaggaaaaaggtcatggactgagtttggagatcactggaatattgtttgtcatcttaacaaatt |
22046630 |
T |
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| Q |
117 |
taaggaaggagatgtgttgaaatttagatttgtcaatcaaaaacaatccaacttaatga-----acaaaaatgtaatttgtttctttatttagtaacatt |
211 |
Q |
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| T |
22046629 |
taaggaaggagatgtgttgaaatctagatttgtcaatcaaaaacaatccaacttaatgaaagttacaaaaatgtaatttgtttctttatttagtaacatt |
22046530 |
T |
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| Q |
212 |
ttaaggatgttataaat-tctatcaatgtatatctttgggttgaagttat |
260 |
Q |
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| T |
22046529 |
ttaaggatgttataaatctctgtcaatgtatatctttgtgttgaagttat |
22046480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 22072957 - 22072912
Alignment:
| Q |
183 |
tgtaatttgtttctttatttagtaacattttaaggatgttataaat |
228 |
Q |
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| T |
22072957 |
tgtaatttgtttctttatttagtaaaattttaaggatgttataaat |
22072912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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