View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13044_high_44 (Length: 212)

Name: NF13044_high_44
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13044_high_44
NF13044_high_44
[»] chr2 (19 HSPs)
chr2 (1-91)||(20242667-20242757)
chr2 (5-90)||(28596502-28596587)
chr2 (17-91)||(24009340-24009414)
chr2 (1-92)||(18840952-18841043)
chr2 (1-91)||(34993922-34994012)
chr2 (1-89)||(2438661-2438749)
chr2 (1-41)||(5367221-5367261)
chr2 (20-91)||(35056927-35056998)
chr2 (2-100)||(15972903-15973001)
chr2 (1-91)||(30404790-30404880)
chr2 (1-47)||(40361738-40361784)
chr2 (42-91)||(10535685-10535734)
chr2 (27-92)||(36096303-36096368)
chr2 (35-91)||(18054716-18054772)
chr2 (1-45)||(18276550-18276594)
chr2 (1-29)||(22550254-22550282)
chr2 (1-29)||(31808106-31808134)
chr2 (1-37)||(34691799-34691835)
chr2 (1-37)||(34714211-34714247)
[»] chr5 (16 HSPs)
chr5 (1-92)||(30098977-30099068)
chr5 (1-91)||(21576685-21576775)
chr5 (1-78)||(26312798-26312875)
chr5 (20-90)||(6401557-6401627)
chr5 (1-91)||(42029781-42029871)
chr5 (1-91)||(43564910-43565000)
chr5 (20-92)||(21814320-21814392)
chr5 (1-89)||(30502330-30502418)
chr5 (1-89)||(30542673-30542761)
chr5 (1-91)||(28588614-28588704)
chr5 (22-92)||(30098387-30098457)
chr5 (1-51)||(32630715-32630765)
chr5 (1-45)||(12927683-12927727)
chr5 (1-89)||(21190998-21191086)
chr5 (1-91)||(27932264-27932354)
chr5 (1-91)||(42893389-42893479)
[»] chr3 (20 HSPs)
chr3 (1-92)||(35222967-35223058)
chr3 (6-91)||(13845465-13845550)
chr3 (1-91)||(40993275-40993365)
chr3 (1-84)||(3631713-3631796)
chr3 (1-91)||(20503494-20503584)
chr3 (6-51)||(2941592-2941637)
chr3 (1-91)||(55401104-55401194)
chr3 (1-89)||(25775538-25775624)
chr3 (1-91)||(11252007-11252095)
chr3 (32-91)||(41961579-41961638)
chr3 (20-90)||(14216951-14217021)
chr3 (20-90)||(14223080-14223150)
chr3 (26-92)||(17005547-17005613)
chr3 (26-92)||(25064972-25065038)
chr3 (2-52)||(25093532-25093582)
chr3 (1-90)||(8789489-8789580)
chr3 (1-30)||(26917299-26917328)
chr3 (1-37)||(7928479-7928515)
chr3 (24-52)||(16192701-16192729)
chr3 (1-37)||(49505148-49505184)
[»] chr8 (17 HSPs)
chr8 (6-91)||(3951476-3951561)
chr8 (1-89)||(3025580-3025668)
chr8 (6-90)||(43737752-43737836)
chr8 (20-94)||(34450958-34451032)
chr8 (1-91)||(14134728-14134818)
chr8 (1-52)||(33405363-33405414)
chr8 (25-91)||(26902104-26902170)
chr8 (9-46)||(126332-126369)
chr8 (4-89)||(926730-926815)
chr8 (1-78)||(8293854-8293931)
chr8 (4-89)||(20679337-20679422)
chr8 (2-91)||(36450694-36450783)
chr8 (1-46)||(9414860-9414905)
chr8 (21-90)||(29447040-29447109)
chr8 (1-45)||(4786324-4786368)
chr8 (1-37)||(22204670-22204706)
chr8 (1-69)||(31557025-31557093)
[»] chr1 (26 HSPs)
chr1 (1-90)||(12918974-12919063)
chr1 (2-91)||(37598861-37598950)
chr1 (1-90)||(40258874-40258963)
chr1 (6-90)||(10577676-10577760)
chr1 (1-89)||(29163323-29163411)
chr1 (1-91)||(5898206-5898296)
chr1 (1-91)||(30749869-30749959)
chr1 (1-91)||(30771320-30771410)
chr1 (19-91)||(32461393-32461465)
chr1 (20-91)||(25934675-25934746)
chr1 (1-91)||(18337358-18337448)
chr1 (1-98)||(18190041-18190138)
chr1 (1-92)||(46348322-46348413)
chr1 (20-91)||(9828103-9828174)
chr1 (1-91)||(51410054-51410144)
chr1 (1-91)||(7918154-7918241)
chr1 (26-92)||(18556384-18556450)
chr1 (2-91)||(27965940-27966027)
chr1 (1-91)||(38078601-38078691)
chr1 (1-30)||(25361915-25361944)
chr1 (1-54)||(36878490-36878543)
chr1 (1-46)||(40181900-40181945)
chr1 (1-92)||(22515826-22515917)
chr1 (19-91)||(41597410-41597482)
chr1 (20-92)||(47989556-47989628)
chr1 (1-37)||(52903278-52903314)
[»] chr7 (19 HSPs)
chr7 (1-91)||(21880181-21880271)
chr7 (9-91)||(598245-598327)
chr7 (1-91)||(18212973-18213063)
chr7 (1-92)||(5835276-5835367)
chr7 (1-90)||(18035806-18035894)
chr7 (1-90)||(22484054-22484143)
chr7 (1-90)||(32287404-32287493)
chr7 (1-41)||(640142-640182)
chr7 (1-69)||(39138473-39138541)
chr7 (1-52)||(15680838-15680889)
chr7 (26-92)||(32093953-32094020)
chr7 (1-51)||(20549820-20549870)
chr7 (1-71)||(27093373-27093443)
chr7 (1-71)||(27184858-27184928)
chr7 (26-91)||(5409771-5409836)
chr7 (1-30)||(5548705-5548734)
chr7 (1-30)||(18013075-18013104)
chr7 (26-91)||(43027404-43027469)
chr7 (1-41)||(22868071-22868111)
[»] chr6 (24 HSPs)
chr6 (1-91)||(34595163-34595253)
chr6 (1-92)||(28152127-28152218)
chr6 (1-90)||(9658908-9658998)
chr6 (157-197)||(11968709-11968749)
chr6 (20-91)||(18367895-18367966)
chr6 (1-91)||(28715324-28715414)
chr6 (6-91)||(13789188-13789273)
chr6 (6-91)||(13797807-13797892)
chr6 (20-92)||(16488518-16488590)
chr6 (1-91)||(17327590-17327685)
chr6 (9-52)||(33001268-33001311)
chr6 (2-48)||(30851630-30851676)
chr6 (42-91)||(4388150-4388199)
chr6 (2-43)||(7740671-7740712)
chr6 (88-121)||(11968749-11968782)
chr6 (1-41)||(19040381-19040421)
chr6 (1-91)||(4877972-4878061)
chr6 (1-91)||(7378008-7378098)
chr6 (1-30)||(9750450-9750479)
chr6 (1-89)||(12696353-12696446)
chr6 (1-89)||(7265535-7265623)
chr6 (1-92)||(13360312-13360402)
chr6 (1-45)||(29020941-29020985)
chr6 (1-105)||(32511592-32511696)
[»] chr4 (25 HSPs)
chr4 (1-91)||(35161065-35161155)
chr4 (20-92)||(5414100-5414172)
chr4 (1-93)||(23292924-23293016)
chr4 (1-52)||(8402721-8402772)
chr4 (20-91)||(22234819-22234890)
chr4 (1-92)||(35157924-35158015)
chr4 (2-90)||(12323944-12324038)
chr4 (1-92)||(40179575-40179666)
chr4 (1-90)||(3947702-3947796)
chr4 (21-91)||(24613630-24613700)
chr4 (1-91)||(49431055-49431145)
chr4 (1-46)||(54580008-54580053)
chr4 (1-93)||(8423656-8423748)
chr4 (2-38)||(20950420-20950456)
chr4 (7-91)||(36509032-36509116)
chr4 (3-59)||(38846984-38847040)
chr4 (8-91)||(12895214-12895297)
chr4 (32-91)||(19482739-19482798)
chr4 (1-92)||(28964187-28964278)
chr4 (1-91)||(16073423-16073513)
chr4 (20-94)||(46083917-46083991)
chr4 (1-66)||(19097859-19097924)
chr4 (7-91)||(34306744-34306828)
chr4 (1-73)||(9996869-9996941)
chr4 (1-41)||(10499260-10499300)
[»] scaffold0050 (1 HSPs)
scaffold0050 (1-88)||(70307-70394)
[»] scaffold0652 (1 HSPs)
scaffold0652 (2-90)||(403-491)
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-52)||(45509-45560)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-92)||(90872-90963)
[»] scaffold0003 (1 HSPs)
scaffold0003 (26-91)||(241659-241724)
[»] scaffold0475 (1 HSPs)
scaffold0475 (2-91)||(3338-3427)
[»] scaffold0306 (1 HSPs)
scaffold0306 (20-89)||(13454-13523)
[»] scaffold0152 (1 HSPs)
scaffold0152 (20-89)||(21804-21873)


Alignment Details
Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 20242757 - 20242667
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||| ||||||||||  |||||  |||||||||||    
T  20242757 taattcagtgtaattatatgtgtcggtgtcggacacaacacgtgtctgacacgaggacacgccttatccgaagagtgtctgtgcttcatag 20242667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 28596502 - 28596587
Alignment:
Q  5 tcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 90  Q
    |||||||||||||| ||||| ||||| ||||||||||||||| |||||  | |||||||| ||||||| ||||| |||||||||||    
T  28596502 tcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacactcggacactcctaatccgaggagtgtccgtgcttcata 28596587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 24009340 - 24009414
Alignment:
Q  17 tatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||| ||||| |||||||||||||||||||||| | |||| |||||||| || ||||| ||||||||||||    
T  24009340 tatgtgtcggtgtcggacacgacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcatag 24009414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 18841043 - 18840952
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    ||||| |||||||||| | ||||| |||||||||||||||| |||| |||||  | |||| ||| ||||||| ||||| |||||||||||||    
T  18841043 taattaagtgtaattacaagtgtcggtgtcagacacgacacatgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatagt 18840952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 34994012 - 34993922
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||||| ||||||||||||||||||||||  |||||||| ||||| |||||  | |||| ||| || | || ||||||||||||||||||    
T  34994012 taattcaatgtaattatatgtgtcagtgtcgaacacgacatgtgtccgacactgggacacgcctaattcaaggagtgttcgtgcttcatag 34993922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 2438749 - 2438661
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 89  Q
    |||||||||||||||| | ||||| ||||| |||||||||| |||| |||||  | |||| ||| ||||||| ||||| ||||||||||    
T  2438749 taattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 5367221 - 5367261
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacac 41  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  5367221 taattcagtgtaattatatgtgtcggtgtcggacacgacac 5367261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 35056927 - 35056998
Alignment:
Q  20 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||| ||||| ||||||||||||||| ||||||  ||||| ||| ||| ||| ||||| ||||||||||||    
T  35056927 gtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttcatag 35056998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 15972903 - 15973001
Alignment:
Q  2 aattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagtgtccaact 100  Q
    ||||||||||||||| | ||||| ||||| ||||||||||||||| ||| |  | |||| ||| ||||||  | ||| |||||||||||| || |||||    
T  15972903 aattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacgccgggacacacctaatccgaagaatgtccgtgcttcatagggtgcaact 15973001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 30404880 - 30404790
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||| | ||||| | ||| |||||||||| |||| ||||| || |||  ||| ||| |||||| ||| |||||||||||    
T  30404880 taattcagtgtaattacaagtgtcggcgtcggacacgacacatgtccgacaccaggacatgcctaatctgagaagcgtttgtgcttcatag 30404790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 40361784 - 40361738
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtct 47  Q
    ||||| ||||||||||||| |||  ||||||||||||||||||||||    
T  40361784 taatttagtgtaattatatctgttggtgtcagacacgacacgtgtct 40361738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 10535734 - 10535685
Alignment:
Q  42 gtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||||||||| || |||| ||| ||||||| ||||||||||||||||||    
T  10535734 gtgtctgacaccaggacacgcctaatccgaggagtgttcgtgcttcatag 10535685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 36096368 - 36096303
Alignment:
Q  27 tgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    |||| |||||||||||||||||||||| | |||| ||||| || |  ||||| |||||||||||||    
T  36096368 tgtcggacacgacacgtgtctgacacggggacacgccttaaccaaagagtgtccgtgcttcatagt 36096303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 18054772 - 18054716
Alignment:
Q  35 acgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||||||  ||||| |||||||| || | ||| ||||||||||||    
T  18054772 acgacacgtgtctgacacggaaacacgccttatccaaggaatgtccgtgcttcatag 18054716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18276550 - 18276594
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgt 45  Q
    ||||||||||||||||| |||||| |||||||| || ||||||||    
T  18276550 taattcagtgtaattatgtgtgtcggtgtcagataccacacgtgt 18276594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 22550282 - 22550254
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgt 29  Q
    |||||||||||||||||||||||||||||    
T  22550282 taattcagtgtaattatatgtgtcagtgt 22550254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 31808106 - 31808134
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgt 29  Q
    |||||||||||||||||||||||||||||    
T  31808106 taattcagtgtaattatatgtgtcagtgt 31808134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34691835 - 34691799
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacg 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  34691835 taattcagtgtaattatatgtgtcggtgtcggacacg 34691799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34714247 - 34714211
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacg 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  34714247 taattcagtgtaattatatgtgtcggtgtcggacacg 34714211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 30099068 - 30098977
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    |||||| ||||||||||||||||| ||||| || ||||||||||||||||||| | |||| |||||||| || |||||||||||||| ||||    
T  30099068 taattctgtgtaattatatgtgtcggtgtcggatacgacacgtgtctgacacggggacacgccttatccaaggagtgttcgtgcttcgtagt 30098977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 21576775 - 21576685
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||| | |||||  |||| |||||||||||||||||||||  | |||| ||| ||||||| ||||| ||||||||||||    
T  21576775 taattcagtgtaattacaagtgtcgatgtcggacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 26312798 - 26312875
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgt 78  Q
    ||||||||||||||||||||| || ||||| ||||||| ||||||||||||| || |||| ||| ||||||| |||||    
T  26312798 taattcagtgtaattatatgtatcggtgtcggacacgatacgtgtctgacaccaggacacacctaatccgaggagtgt 26312875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 6401557 - 6401627
Alignment:
Q  20 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 90  Q
    ||||||||||| |||||||||||||||||||||| | | || |||||||| || ||||| |||||||||||    
T  6401557 gtgtcagtgtcggacacgacacgtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcata 6401627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 42029781 - 42029871
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||||| ||||||||||||| || ||||| |||||||||| |||||| ||||   |||| ||||||||||| ||||| ||||| ||||||    
T  42029781 taattcaatgtaattatatgtatcggtgtcggacacgacacatgtctgtcacgtagacacgccttatccgaggagtgtccgtgcatcatag 42029871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 43564910 - 43565000
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||| |||||||||||| ||||| ||||| ||||||||| ||||| ||| |  | |||| ||| ||||||||||||| ||||||||||||    
T  43564910 taatttagtgtaattataagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcatag 43565000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 21814320 - 21814392
Alignment:
Q  20 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    ||||| ||||| ||||||||||||||||| |||| | |||| |||||||| || | |||||||||||||||||    
T  21814320 gtgtcggtgtcggacacgacacgtgtctggcacggggacacgccttatccaaggaatgttcgtgcttcatagt 21814392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30502418 - 30502330
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 89  Q
    |||||||||||||||||||||||| ||||| |||||||||| |||| |||||  | |||  ||| |||| || | ||||||||||||||    
T  30502418 taattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgcttcat 30502330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30542761 - 30542673
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 89  Q
    |||||||||||||||||||||||| ||||| |||||||||| |||| |||||  | |||  ||| |||| || | ||||||||||||||    
T  30542761 taattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgcttcat 30542673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 28588704 - 28588614
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||||| ||||| ||||| |||||||||| | |||||||| || |||| | | ||||||  ||||| | ||||||||||    
T  28588704 taattcagtgtaattataggtgtcggtgtcggacacgacacatatctgacaccaggacacgcttaatccgaagagtgtccatgcttcatag 28588614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 30098387 - 30098457
Alignment:
Q  22 gtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    ||||||||| ||||||||||||||| ||||| || |||| ||| ||||||| | ||| |||||||||||||    
T  30098387 gtcagtgtcggacacgacacgtgtcagacaccaggacacacctaatccgaggaatgtccgtgcttcatagt 30098457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32630765 - 32630715
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgaca 51  Q
    ||||||| |||||||||||||||||||||| || |||||||||||| ||||    
T  32630765 taattcaatgtaattatatgtgtcagtgtcggatacgacacgtgtccgaca 32630715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12927683 - 12927727
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgt 45  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||    
T  12927683 taatttagtgtaattatatatgtcagtgtcagacatgacacgtgt 12927727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 21191086 - 21190998
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 89  Q
    |||||||||||||||| | ||||| ||||| ||||| ||||||||| ||| |  | |||| ||| ||||||| ||||| ||||||||||    
T  21191086 taattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgactccgggacacgcctaatccgaggagtgtccgtgcttcat 21190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 27932264 - 27932354
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||| |  | |  ||||| ||||||||||||||| ||||| || |||| ||| || |||| |||||| |||||||||||    
T  27932264 taattcagtgtaattacaaatcttggtgtcggacacgacacgtgtcggacaccaggacacgcctaattcgaggagtgtttgtgcttcatag 27932354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 42893389 - 42893479
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||| ||||||||||| | ||||| ||||||||||| ||||||||| ||||| || |||| ||| ||  ||| ||||| | ||||||||||    
T  42893389 taatccagtgtaattacaagtgtcggtgtcagacacaacacgtgtccgacaccaggacacgcctaatatgaggagtgtccatgcttcatag 42893479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 35222967 - 35223058
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    ||||||| |||||||||||||||| ||||| |||| ||||||||||||||||| | |||| | ||||||||| ||||| |||||||||||||    
T  35222967 taattcaatgtaattatatgtgtcggtgtcggacatgacacgtgtctgacacggggacacgctttatccgaggagtgtccgtgcttcatagt 35223058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 13845550 - 13845465
Alignment:
Q  6 cagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||||||   |||| |||||||| || ||||| ||||||||||||    
T  13845550 cagtgtaattatatgtgtcggtgtcggacacgagacgtgtctgacacggagacacgccttatccaaggagtgtccgtgcttcatag 13845465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 40993365 - 40993275
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||||||||||| ||||| |||||||||| |||| |||||  | |||| ||| ||||||| ||||| | ||||||||||    
T  40993365 taattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcatag 40993275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 3631713 - 3631796
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgc 84  Q
    |||||||||||||||||||||| ||||||| |||||||||| |||| ||||| || |||| |||  |||||| ||||| |||||    
T  3631713 taattcagtgtaattatatgtgccagtgtcggacacgacacatgtccgacaccaggacacgcctagtccgaggagtgtccgtgc 3631796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 20503494 - 20503584
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||| | ||||| ||||  |||||||||| ||||||||||  | |||| ||| ||||||| ||||| ||||||||||||    
T  20503494 taattcagtgtaattacaagtgtcggtgttggacacgacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 20503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 2941592 - 2941637
Alignment:
Q  6 cagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgaca 51  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  2941592 cagtgtaattatatgtgtcggtgtcggacacgacacgtgtctgaca 2941637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 55401104 - 55401194
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgaca-cgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||| |||||||||| | ||||| ||||| ||||||||||||||| |||| |||| |||| ||| ||||||| ||||| ||||||||||||    
T  55401104 taatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgag-acacgcctaatccgaggagtgtccgtgcttcatag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 25775538 - 25775624
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 89  Q
    |||||||||||||||| | ||||| ||||| |||||| |  ||||| ||||| || |||| ||| ||||||| ||||||||||||||||    
T  25775538 taattcagtgtaattacaagtgtcggtgtcggacacgtc--gtgtccgacaccaggacacgcctaatccgaggagtgttcgtgcttcat 25775624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 11252007 - 11252095
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||||  ||||| ||||||||||| ||||||||| | ||   |||||| ||| ||||||| |||||  |||||||||||    
T  11252007 taattcagtgtaattat--gtgtcggtgtcagacacaacacgtgtccggcatcggaacacgcctaatccgaggagtgtctgtgcttcatag 11252095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 41961638 - 41961579
Alignment:
Q  32 gacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||||||||||||| |||||  | |||| ||| ||||||||||||| ||||||||||||    
T  41961638 gacacgacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 41961579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 14216951 - 14217021
Alignment:
Q  20 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 90  Q
    |||| |||||| ||||||||||||||  |||||  | |||| ||| ||||||||||||| |||||||||||    
T  14216951 gtgttagtgtcggacacgacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcata 14217021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 14223080 - 14223150
Alignment:
Q  20 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 90  Q
    |||| |||||| ||||||||||||||  |||||  | |||| ||| ||||||||||||| |||||||||||    
T  14223080 gtgttagtgtcggacacgacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcata 14223150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 17005613 - 17005547
Alignment:
Q  26 gtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    ||||||||||  ||||||||||||||| || ||||  || ||||||| |||||| ||||||||||||    
T  17005613 gtgtcagacataacacgtgtctgacaccaggacacctctaatccgaggagtgtttgtgcttcatagt 17005547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 25064972 - 25065038
Alignment:
Q  26 gtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    ||||| |||||||||||||||||||||  | ||||   ||||||||| |||||||||||| ||||||    
T  25064972 gtgtcggacacgacacgtgtctgacaccgggacacggtttatccgaggagtgttcgtgctccatagt 25065038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 25093532 - 25093582
Alignment:
Q  2 aattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacac 52  Q
    ||||||||||||||||||||||| ||||| ||||| |||| |||| |||||    
T  25093532 aattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacac 25093582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 8789580 - 8789489
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacg--tgtctgacac-gagaacactccttatccgagaagtgttcgtgcttcata 90  Q
    |||||| ||||||||||||||||| ||||| ||||||||||   |||| ||||| |||| ||| ||| ||||||| ||||| |||||||||||    
T  8789580 taattccgtgtaattatatgtgtcggtgtcggacacgacacacatgtcggacaccgaga-cacgcctaatccgaggagtgtccgtgcttcata 8789489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 26917299 - 26917328
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtc 30  Q
    ||||||||||||||||||||||||||||||    
T  26917299 taattcagtgtaattatatgtgtcagtgtc 26917328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7928479 - 7928515
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacg 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  7928479 taattcagtgtaattatatgtgtcggtgtcggacacg 7928515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 16192729 - 16192701
Alignment:
Q  24 cagtgtcagacacgacacgtgtctgacac 52  Q
    |||||||||||||||||||||||||||||    
T  16192729 cagtgtcagacacgacacgtgtctgacac 16192701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 49505184 - 49505148
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacg 37  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  49505184 taatttagtgtaattatatgtgtcagtgtcggacacg 49505148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 3951561 - 3951476
Alignment:
Q  6 cagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| ||| |||| || ||| | ||||||||||||    
T  3951561 cagtgtacttatatgtgtcggtgtcagacacgacacgtgtctgacacgggaacacgcctaatccaaggagtttccgtgcttcatag 3951476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 3025580 - 3025668
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 89  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||    ||||  || ||||||| ||||| ||||||||||    
T  3025580 taattcagtgtaattataggtgtcagtgtcggacacgacacgtgtctgacactgtgacacggctaatccgaggagtgtccgtgcttcat 3025668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 43737836 - 43737752
Alignment:
Q  6 cagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 90  Q
    ||||||||||||||||||| ||||| ||||||||| |||||||||||| | | || |||||||| || ||||| |||||||||||    
T  43737836 cagtgtaattatatgtgtcggtgtcggacacgacaggtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcata 43737752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 34451032 - 34450958
Alignment:
Q  20 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagtgt 94  Q
    ||||| ||||| |||||||||||||||||||||| | |||| |||||||| || ||||| |||||||||||||||    
T  34451032 gtgtcggtgtcggacacgacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcatagtgt 34450958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 14134728 - 14134818
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||||||||||||||||| |||| |||||| |||||||||||||| | ||| || |||| ||| || |||| ||||| |||| |||||||    
T  14134728 taattcagtgtaattatatatgtcggtgtcaaacacgacacgtgtccgtcaccaggacacgcctaattcgaggagtgtccgtgtttcatag 14134818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 33405414 - 33405363
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacac 52  Q
    ||||| |||||||||||||||||| ||||| |||||||||| ||||||||||    
T  33405414 taatttagtgtaattatatgtgtcggtgtcggacacgacacatgtctgacac 33405363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 26902170 - 26902104
Alignment:
Q  25 agtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||| ||||||||||||||||| |||| | |||| ||||||| ||| ||||| ||||||||||||    
T  26902170 agtgtcggacacgacacgtgtctggcacggggacacgccttatctgaggagtgtccgtgcttcatag 26902104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 126369 - 126332
Alignment:
Q  9 tgtaattatatgtgtcagtgtcagacacgacacgtgtc 46  Q
    |||||||||||||||||||||| |||||||||||||||    
T  126369 tgtaattatatgtgtcagtgtcggacacgacacgtgtc 126332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 926815 - 926730
Alignment:
Q  4 ttcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 89  Q
    ||||||||||||||| ||||| ||||| ||| ||||||||||| |||||  | |||  | ||||||||| ||||| ||||||||||    
T  926815 ttcagtgtaattataagtgtcggtgtcggacgcgacacgtgtccgacaccgggacatgctttatccgaggagtgtccgtgcttcat 926730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 8293854 - 8293931
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgt 78  Q
    |||||||||||||||||||||||| |||||| ||| ||||| | ||||||||  | |||| ||| ||||||| |||||    
T  8293854 taattcagtgtaattatatgtgtcggtgtcaaacatgacacatatctgacacctggacacacctaatccgaggagtgt 8293931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 20679422 - 20679337
Alignment:
Q  4 ttcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 89  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||| |||||  | |||| ||||| ||||| ||||| | ||||||||    
T  20679422 ttcagtgtaattataagtgtcggtgtcagacgcaacacgtgtccgacaccgggacacgccttaaccgaggagtgtccatgcttcat 20679337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 36450783 - 36450694
Alignment:
Q  2 aattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||||||||||||| | ||||  ||||| |||||||| |||||| ||||| || |||| ||| ||||||| |||||  |||||||||||    
T  36450783 aattcagtgtaattacaagtgtaggtgtcggacacgacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 9414905 - 9414860
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtc 46  Q
    |||||||||| ||||||| ||||  |||||||||||||||||||||    
T  9414905 taattcagtgcaattataagtgttggtgtcagacacgacacgtgtc 9414860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 29447109 - 29447040
Alignment:
Q  21 tgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 90  Q
    |||| ||||| ||||||||| ||||||||||| || |||| ||| |||| || ||||| |||||||||||    
T  29447109 tgtcggtgtcggacacgacatgtgtctgacaccaggacacgcctaatcctaggagtgtccgtgcttcata 29447040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4786368 - 4786324
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgt 45  Q
    |||||||||||||||||||||||| ||||| || |||||| ||||    
T  4786368 taattcagtgtaattatatgtgtcggtgtcggatacgacatgtgt 4786324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 22204670 - 22204706
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacg 37  Q
    |||||||||||||||| | ||||||||||||||||||    
T  22204670 taattcagtgtaattacaagtgtcagtgtcagacacg 22204706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 31557025 - 31557093
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatcc 69  Q
    |||||||||||||||| | || || |||||||||||||||| |||| ||||| || |||| ||| ||||    
T  31557025 taattcagtgtaattacaagtttcggtgtcagacacgacacatgtccgacaccaggacacgcctaatcc 31557093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 12918974 - 12919063
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 90  Q
    ||||||| ||| |||||||||||  || || |||||||||||||||||||||| | ||||  ||||||||||||||||||||||||||||    
T  12918974 taattcaatgtgattatatgtgttggtatcggacacgacacgtgtctgacacggggacacggcttatccgagaagtgttcgtgcttcata 12919063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 37598861 - 37598950
Alignment:
Q  2 aattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||||| ||||   | |||| ||| ||||||| ||||| ||||||||||||    
T  37598861 aattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcatag 37598950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 40258963 - 40258874
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 90  Q
    |||||||||||||||| | ||||| |||||||||||||||| |||| ||||| || |||| ||| ||||||| ||||| | |||||||||    
T  40258963 taattcagtgtaattacaagtgtcggtgtcagacacgacacctgtccgacaccaggacacgcctaatccgaggagtgtccatgcttcata 40258874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 10577760 - 10577676
Alignment:
Q  6 cagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 90  Q
    ||||||||||||||||||| | | | |||||||| ||||||||||||| | |||| |||||||| || ||||| |||||||||||    
T  10577760 cagtgtaattatatgtgtcgggggcggacacgacgcgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcata 10577676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 29163411 - 29163323
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 89  Q
    ||||||| | |||||||||||||| ||||| ||||||||||||| |||||||  | ||||  || ||| ||||||||||||||||||||    
T  29163411 taattcaatttaattatatgtgtcggtgtcggacacgacacgtgcctgacaccgggacacggctaatcagagaagtgttcgtgcttcat 29163323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 5898296 - 5898206
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||  ||||  | ||||  || ||||||| ||||| ||||||| ||||    
T  5898296 taattcagtgtaattatatgcgtcggtgtcagacacgacacgtgtccaacaccgggacacgtctaatccgaggagtgtccgtgctttatag 5898206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 30749869 - 30749959
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||||||||||| ||||| ||||| ||| |||| ||||||||| | || | |||| |||| ||||| | ||||||||||    
T  30749869 taattcagtgtaattatatgtgtcggtgtcggacaccacatgtgtttgacacgaggatacgcattattcgaggagtgtccatgcttcatag 30749959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 30771320 - 30771410
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||||||||||| ||||| ||||| ||| |||| ||||||||| | || | |||| |||| ||||| | ||||||||||    
T  30771320 taattcagtgtaattatatgtgtcggtgtcggacaccacatgtgtttgacacgaggatacgcattattcgaggagtgtccatgcttcatag 30771410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 32461465 - 32461393
Alignment:
Q  19 tgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||| ||||| |||||||||||||||||||||  | |||| ||| |||| |||||||| ||||||||||||    
T  32461465 tgtgtcggtgtcggacacgacacgtgtctgacactgggacacgcctaatccaagaagtgtccgtgcttcatag 32461393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 25934675 - 25934746
Alignment:
Q  20 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||| ||||| |||||||||||||||||||||| | | || |||||||| || ||||| ||||||||||||    
T  25934675 gtgtcggtgtcggacacgacacgtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcatag 25934746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 18337358 - 18337448
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||| | ||||| ||||| ||||| ||||||||| |||||  | |||  ||| ||||||| ||||| ||||||||||||    
T  18337358 taattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgacactgggacatgcctgatccgaggagtgtccgtgcttcatag 18337448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 18190138 - 18190041
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagtgtccaa 98  Q
    |||||||||||||||| | |||||  |||||||||| ||||||||| |||||  | |||| ||| ||||||| |||||  | ||||||||||| ||||    
T  18190138 taattcagtgtaattacaagtgtcgatgtcagacacaacacgtgtccgacaccgggacacacctaatccgaggagtgtatgcgcttcatagtgaccaa 18190041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 46348413 - 46348322
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgaca-cgagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    ||||| |||||||||| | ||||| ||||| ||||||||||||||| |||| |||| |||| ||| |||||||  |||| |||||||||||||    
T  46348413 taatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgag-acacgcctgatccgaggtgtgtccgtgcttcatagt 46348322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 9828103 - 9828174
Alignment:
Q  20 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||| ||||||||||||||||||||| |||||  | ||||  || ||||||| ||||| ||||||||||||    
T  9828103 gtgtccgtgtcagacacgacacgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 9828174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 51410054 - 51410144
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgaca-cgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||| | ||||| ||||| |||||||||||| || |||| |||| |||| ||| |||| || ||| ||||||||||||||    
T  51410054 taattcagtgtaattacaagtgtcggtgtcggacacgacacgtatccgacaccgag-acacgcctaatccaaggagtattcgtgcttcatag 51410144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 7918241 - 7918154
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtc-agacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||||||||||||||||||||||||||||  | ||    |||| |||||||| || |||| ||| ||||||| ||||| ||||||||||||    
T  7918241 taattcagtgtaattatatgtgtcagtgtcgtgtca----acgtttctgacaccaggacacacctaatccgaggagtgtccgtgcttcatag 7918154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 18556450 - 18556384
Alignment:
Q  26 gtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    ||||||||| |||||||| || |||||  | |||| ||| ||||||||||||| |||||||||||||    
T  18556450 gtgtcagacccgacacgtatccgacactgggacacgcctaatccgagaagtgtccgtgcttcatagt 18556384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 27966027 - 27965940
Alignment:
Q  2 aattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||||||||||||||||||  | |||||||||||| | |||| |||||||  | |||| ||| ||||||| ||||| | ||||||||||    
T  27966027 aattcagtgtaattatatgt--ccgtgtcagacacgcctcgtgcctgacaccgggacacgcctaatccgaggagtgtccatgcttcatag 27965940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 38078691 - 38078601
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||||| |||||||| | ||||| ||||| |||||||||| |||   |||| || |||| ||| ||||||| ||| ||||||||||||||    
T  38078691 taattcaatgtaattacaagtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgaggagtattcgtgcttcatag 38078601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 25361915 - 25361944
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtc 30  Q
    ||||||||||||||||||||||||||||||    
T  25361915 taattcagtgtaattatatgtgtcagtgtc 25361944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 36878490 - 36878543
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacga 54  Q
    |||||||||||||||||| ||||| ||||| ||||||| || |||| |||||||    
T  36878490 taattcagtgtaattataggtgtcggtgtctgacacgaaacatgtccgacacga 36878543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 40181900 - 40181945
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtc 46  Q
    ||||||||||||||||||||| || ||||| ||||| |||||||||    
T  40181900 taattcagtgtaattatatgtatcggtgtcggacacaacacgtgtc 40181945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 22515917 - 22515826
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacac-gagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    ||||| |||||||||| | ||||| ||||| |||||||||| | || ||||| |||| ||| ||| ||||||| ||||| |||||||||||||    
T  22515917 taatttagtgtaattacaagtgtcggtgtcggacacgacacatatccgacaccgaga-cacgcctaatccgaggagtgtccgtgcttcatagt 22515826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 41597482 - 41597410
Alignment:
Q  19 tgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||| ||||| |||||||||||||||||||||| | | || | |||||| || |||||  |||||||||||    
T  41597482 tgtgtccgtgtcggacacgacacgtgtctgacacggggatacgctttatccaaggagtgtctgtgcttcatag 41597410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 47989556 - 47989628
Alignment:
Q  20 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    ||||| ||||| |||||||||| |||||||||   | |||| ||| ||||||| ||||| |||||||||||||    
T  47989556 gtgtcggtgtcggacacgacacatgtctgacatcgggacacgcctaatccgaggagtgtccgtgcttcatagt 47989628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 52903278 - 52903314
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacg 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  52903278 taattcagtgtaattatatgtgtcggtgtcggacacg 52903314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 21880181 - 21880271
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||| | ||||| ||||| |||||||||| |||| ||||| || |||| ||| ||||||||||||| ||||||||||||    
T  21880181 taattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcatag 21880271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 598245 - 598327
Alignment:
Q  9 tgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||||| || ||||| ||||||||||||||||||||| |||||  | |||| ||| ||||||||||||| ||||||||||||    
T  598245 tgtaattgtaagtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 18213063 - 18212973
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||| |||||||||||||||||| ||||| |||||||| | | ||||||||| | |||| ||||||||||| |||||  |||||||||||    
T  18213063 taatttagtgtaattatatgtgtcggtgtcggacacgacccctttctgacacggggacacgccttatccgaggagtgtctgtgcttcatag 18212973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 5835276 - 5835367
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    |||||||||||||||||||||||| |||||||||| |||| |||||||| ||  | |||| | | ||||||||||||||  ||||| |||||    
T  5835276 taattcagtgtaattatatgtgtcggtgtcagacatgacatgtgtctgataccgggacacgcttaatccgagaagtgtttttgctttatagt 5835367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 18035894 - 18035806
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 90  Q
    |||||||| ||||||| |||||||||||| ||| | ||||| ||||||||||| ||||||  || ||||||| ||||| |||||||||||    
T  18035894 taattcagcgtaattacatgtgtcagtgtgagataggacacatgtctgacacg-gaacacgtctaatccgaggagtgtccgtgcttcata 18035806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 22484054 - 22484143
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgaca-cgagaacactccttatccgagaagtgttcgtgcttcata 90  Q
    ||||||||| |||||||||||||| |||||||||| ||||| |||| |||| |||| |||   || ||||||||||||| |||||||||||    
T  22484054 taattcagtataattatatgtgtcggtgtcagacatgacacatgtccgacatcgag-acatgtctgatccgagaagtgtccgtgcttcata 22484143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 32287493 - 32287404
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 90  Q
    |||||||||| || |||||||||| ||||| |||| |||| ||||| |||||  | |||| ||| ||||||| ||||| |||||||||||    
T  32287493 taattcagtgcaagtatatgtgtcggtgtcggacatgacaagtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 32287404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 640142 - 640182
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacac 41  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  640142 taattcagtgtaattatatgtgtcggtgtcagatacgacac 640182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 39138473 - 39138541
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatcc 69  Q
    ||||||||||||||||||| |||| ||||| ||||||| || ||||| ||||| | |||| ||||||||    
T  39138473 taattcagtgtaattatatatgtcggtgtcggacacgatacatgtctaacacggggacacgccttatcc 39138541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 15680838 - 15680889
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacac 52  Q
    ||||| |||||||||||| ||||| ||||| ||||||||||||||| |||||    
T  15680838 taatttagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacac 15680889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 32094020 - 32093953
Alignment:
Q  26 gtgtcagacacgacacgtgtctgacac-gagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    ||||| ||||||||||||||| ||||| | | |||| ||| ||||||| |||||||||||||||||||    
T  32094020 gtgtcggacacgacacgtgtccgacaccggggacacgcctaatccgaggagtgttcgtgcttcatagt 32093953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 20549820 - 20549870
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgaca 51  Q
    |||||||||||||||||||||||| ||||| ||||| |||| |||| ||||    
T  20549820 taattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgaca 20549870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 27093443 - 27093373
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccga 71  Q
    ||||| |||||||||||||| ||| |||| |||||||||| ||||| ||||| || |||| ||| ||||||    
T  27093443 taatttagtgtaattatatgcgtcggtgttagacacgacatgtgtccgacactaggacacacctaatccga 27093373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 27184858 - 27184928
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccga 71  Q
    ||||| |||||||||||||| ||| |||| |||||||||| ||||| ||||| || |||| ||| ||||||    
T  27184858 taatttagtgtaattatatgcgtcggtgttagacacgacatgtgtccgacactaggacacacctaatccga 27184928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 5409836 - 5409771
Alignment:
Q  26 gtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||| ||||||||||||||| |||||  | |||| ||| ||||||| ||||| ||||||||||||    
T  5409836 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 5409771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 5548705 - 5548734
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtc 30  Q
    ||||||||||||||||||||||||||||||    
T  5548705 taattcagtgtaattatatgtgtcagtgtc 5548734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 18013104 - 18013075
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtc 30  Q
    ||||||||||||||||||||||||||||||    
T  18013104 taattcagtgtaattatatgtgtcagtgtc 18013075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 43027469 - 43027404
Alignment:
Q  26 gtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||||||||||||||||||| |||||  | |||| ||| ||||||  ||||| ||||||||||||    
T  43027469 gtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatag 43027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 22868071 - 22868111
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacac 41  Q
    ||||||||||||||||||||||||||| ||| |||| ||||    
T  22868071 taattcagtgtaattatatgtgtcagtatcaaacacaacac 22868111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 34595163 - 34595253
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||| | ||||| ||||| |||||||||||||||||||||  | |||| ||| ||||||| ||||| ||||||||||||    
T  34595163 taattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 34595253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 28152127 - 28152218
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    |||||||||||||||| | ||||| ||||| ||||||||||||||| |||||  | |||  ||| ||||||| |||||||||||||||||||    
T  28152127 taattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcatagt 28152218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 9658908 - 9658998
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactcctta-tccgagaagtgttcgtgcttcata 90  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||||||||||  |||||| ||| | ||| || ||||| |||||||||||    
T  9658908 taattcagtgtaattatatttgtcggtgttagacacgacacgtgtctgacaccggaacacgcctaattccaaggagtgtccgtgcttcata 9658998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 11968749 - 11968709
Alignment:
Q  157 gcatgaatgtttatgttatgttcatgtttgattttagttgt 197  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11968749 gcatgaatgtttatgttatgttcatgtttgattttagttgt 11968709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 18367895 - 18367966
Alignment:
Q  20 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||| |||||||||||||||| ||||||||||| | |||| |||||||| || ||||| ||||||||||||    
T  18367895 gtgtcggtgtcagacacgacacatgtctgacacggggacacgccttatccaaggagtgtccgtgcttcatag 18367966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 28715324 - 28715414
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||| | ||||| ||||| ||||||||||||||  |||||  | |||| ||| || |||||||||| ||||||||||||    
T  28715324 taattcagtgtaattacaagtgtcggtgtcggacacgacacgtgttcgacaccgggacacgcctaattcgagaagtgtacgtgcttcatag 28715414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 13789188 - 13789273
Alignment:
Q  6 cagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||| ||| |||| |||| ||||||||||||||| | | | || |||||| | || ||||||||||||||||||    
T  13789188 cagtgtaattatatgtatcaatgtcggacatgacacgtgtctgacatggggatacgccttattcaaggagtgttcgtgcttcatag 13789273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 13797807 - 13797892
Alignment:
Q  6 cagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||| ||| |||| |||| ||||||||||||||| | | | || |||||| | || ||||||||||||||||||    
T  13797807 cagtgtaattatatgtatcaatgtcggacatgacacgtgtctgacatggggatacgccttattcaaggagtgttcgtgcttcatag 13797892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 16488590 - 16488518
Alignment:
Q  20 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    ||||| ||||| ||||||||||||||||| |||| | |||| |||||||| || | |||||||||||||||||    
T  16488590 gtgtcggtgtcggacacgacacgtgtctggcacggggacacgccttatccaaggaatgttcgtgcttcatagt 16488518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 17327685 - 17327590
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtca-----gacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||| ||||||| ||||||||||||||||      |||||||||||||||||||||  | |||| ||| ||||||| ||||| ||||||||||||    
T  17327685 taatttagtgtaactatatgtgtcagtgtcgtgtcggacacgacacgtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 17327590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 33001311 - 33001268
Alignment:
Q  9 tgtaattatatgtgtcagtgtcagacacgacacgtgtctgacac 52  Q
    |||||||||||||||| ||||| |||||||||||||||||||||    
T  33001311 tgtaattatatgtgtcggtgtcggacacgacacgtgtctgacac 33001268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 30851630 - 30851676
Alignment:
Q  2 aattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctg 48  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||||    
T  30851630 aattcaatgtaattatatgtgtcggtgtcggacacgacacgtgtctg 30851676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 4388150 - 4388199
Alignment:
Q  42 gtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||| |||| |||||||||||||||||  |||||||||||    
T  4388150 gtgtctgacacgaggacacgccttatccgagaagtgtctgtgcttcatag 4388199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 7740671 - 7740712
Alignment:
Q  2 aattcagtgtaattatatgtgtcagtgtcagacacgacacgt 43  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  7740671 aattgagtgtaattatatgtgtcagtgtcggacacgacacgt 7740712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 121
Target Start/End: Complemental strand, 11968782 - 11968749
Alignment:
Q  88 atagtgtccaactaatgtaccttttactatatcg 121  Q
    ||||||||||||||||||||||||||||||||||    
T  11968782 atagtgtccaactaatgtaccttttactatatcg 11968749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 19040381 - 19040421
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacac 41  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  19040381 taattcagtgtaattatatgtgtctgtgtcggacacgacac 19040421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 4877972 - 4878061
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||| ||| |||||| | ||||| ||||| |||||||||| |||| ||||| || |||| ||| ||||||| ||||| ||||||||||||    
T  4877972 taattaagtataattacaagtgtcggtgtcggacacgacacatgtccgacac-aggacacgcctaatccgaggagtgtccgtgcttcatag 4878061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 7378008 - 7378098
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||||| |||||||||||||||| ||||| ||||||||| |  || |||||  | ||||  || ||| ||||||||| ||||||||||||    
T  7378008 taattcaatgtaattatatgtgtcggtgtcggacacgacatgcatccgacaccgggacacggctaatctgagaagtgtccgtgcttcatag 7378098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 9750479 - 9750450
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtc 30  Q
    ||||||||||||||||||||||||||||||    
T  9750479 taattcagtgtaattatatgtgtcagtgtc 9750450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 12696353 - 12696446
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtca-----gacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 89  Q
    |||||||||||||||| | |||||||||||      |||||||||||||||||||||  | |||| |||||||| || |||||  |||||||||    
T  12696353 taattcagtgtaattacaagtgtcagtgtcgtgtcggacacgacacgtgtctgacaccgggacacaccttatccaaggagtgtctgtgcttcat 12696446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 7265623 - 7265535
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 89  Q
    |||||||||||||||||||||||| ||||| ||||| | || |||| |||||  ||| |  ||| ||||||| || || ||||||||||    
T  7265623 taattcagtgtaattatatgtgtcggtgtcggacacaatacatgtccgacaccggaatatgcctaatccgaggagcgtccgtgcttcat 7265535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 13360402 - 13360312
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacac-gagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    ||||||||||||||||||||| || ||||||||||| |||  |||| ||||| ||| |||| ||| ||||||  ||||| |||||||||||||    
T  13360402 taattcagtgtaattatatgtttcggtgtcagacacaaca-atgtccgacactgag-acacgcctaatccgaagagtgtccgtgcttcatagt 13360312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29020941 - 29020985
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgt 45  Q
    |||||||||||||||||| ||||  ||||| ||||||||||||||    
T  29020941 taattcagtgtaattataggtgtttgtgtcggacacgacacgtgt 29020985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 32511696 - 32511592
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagtgtccaact 100  Q
    |||||||||||||||||| ||||  ||||| || ||||||  |||||||||   || ||| ||| ||| ||| ||||| |||||||||||||  |||| |    
T  32511696 taattcagtgtaattataagtgttggtgtcggatacgacatatgtctgacatcggagcacgcctaatcggaggagtgtccgtgcttcatagttcccaaat 32511597  T
Q  101 aatgt 105  Q
    |||||    
T  32511596 aatgt 32511592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 35161065 - 35161155
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||||| || |||| ||| ||||||||||||||| |||||  |||||| ||| |||||| |||||| ||||||||||||    
T  35161065 taattcagtgtaattataagtatcagagtcggacacgacacgtgtccgacaccggaacacacctaatccgaaaagtgtccgtgcttcatag 35161155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 5414172 - 5414100
Alignment:
Q  20 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    ||||||||||| |||||||||||||||||||||  | |||| |||||||| || ||||| |||||||||||||    
T  5414172 gtgtcagtgtcggacacgacacgtgtctgacacagggacacaccttatccaaggagtgtccgtgcttcatagt 5414100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 23293016 - 23292924
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagtg 93  Q
    ||||||||| |||||| | ||||| ||||| ||||||||||||||| |||||  | |||| ||| ||||||| ||||| ||||||||||||||    
T  23293016 taattcagtataattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagtg 23292924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 8402772 - 8402721
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacac 52  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||| |||||    
T  8402772 taattcagtgtaattatatgtctcagtgtcagacacgacacttgtccgacac 8402721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 22234890 - 22234819
Alignment:
Q  20 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||| ||||| ||||||||||||||| ||||| || ||||  || ||||||||||||||||||||||||||    
T  22234890 gtgtcggtgtctgacacgacacgtgtccgacaccaggacacagctaatccgagaagtgttcgtgcttcatag 22234819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 35158015 - 35157924
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    ||||| |||||||||||| ||||| ||||| |||||||||| ||||  ||||  |||||| | | ||||||||||||| |||||||||||||    
T  35158015 taatttagtgtaattataagtgtcggtgtctgacacgacacatgtccaacaccggaacacgcttaatccgagaagtgtccgtgcttcatagt 35157924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 12323944 - 12324038
Alignment:
Q  2 aattcagtgtaattatatgtgtcagtgtcag------acacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 90  Q
    |||||||||||||||||| |||||||||| |      ||| ||||||||| || |||| |||||| ||||||||||| ||||| |||||||||||    
T  12323944 aattcagtgtaattatatatgtcagtgtcggtgtcggacatgacacgtgtgtggcacgggaacacaccttatccgaggagtgtccgtgcttcata 12324038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 40179666 - 40179575
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    |||||||||||||||||||| ||| ||||| |||||||||| |||  ||||| |  |||| ||| ||||||||| | ||||||||| |||||    
T  40179666 taattcagtgtaattatatgcgtcggtgtcggacacgacacatgttcgacaccatgacacgcctaatccgagaattattcgtgcttgatagt 40179575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 3947796 - 3947702
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtca-----gacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 90  Q
    |||||||||||||||| | |||||||||||      ||||||||||||||| ||||| || |||| ||| ||||||| ||||| |||||||||||    
T  3947796 taattcagtgtaattacaagtgtcagtgtcgtgtcggacacgacacgtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcata 3947702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 24613700 - 24613630
Alignment:
Q  21 tgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||| ||||||||||||||||||||||||||| || ||||  || |||| || ||||| ||||||||||||    
T  24613700 tgtcggtgtcagacacgacacgtgtctgacaccaggacacgtctaatcctaggagtgtccgtgcttcatag 24613630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 49431055 - 49431145
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||| | ||||| ||||| |||||||||||||||  ||||  | |||| ||||||||||| ||||| | ||||| ||||    
T  49431055 taattcagtgtaattaaaagtgtcggtgtcggacacgacacgtgtccaacaccgggacacgccttatccgaggagtgtccatgctttatag 49431145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 54580053 - 54580008
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtc 46  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||    
T  54580053 taattcagtgtaattataagtgtcggtgtcggacacgacacgtgtc 54580008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 8423748 - 8423656
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagtg 93  Q
    ||||||||||||||||||  |||| ||||| |||||||||  |||| |||||  | |||| ||| ||| ||||||||| ||||| ||||||||    
T  8423748 taattcagtgtaattataaatgtcggtgtcggacacgacagctgtccgacaccgggacacgcctaatcggagaagtgtccgtgcgtcatagtg 8423656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 20950456 - 20950420
Alignment:
Q  2 aattcagtgtaattatatgtgtcagtgtcagacacga 38  Q
    ||||||||||||||||||||||| |||||||||||||    
T  20950456 aattcagtgtaattatatgtgtcggtgtcagacacga 20950420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 36509116 - 36509032
Alignment:
Q  7 agtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||||| | ||| ||| |||||||||||||| || || ||||   | ||||||||||| ||| ||||||||||    
T  36509116 agtgtaattatatgtgtcggcgtcggacgcgacacgtgtctgataccaggacacgtttaatccgagaagtattcatgcttcatag 36509032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 38847040 - 38846984
Alignment:
Q  3 attcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaaca 59  Q
    |||||||||||||| | ||||||||||| || |||||||||||| ||||| ||||||    
T  38847040 attcagtgtaattacaagtgtcagtgtcggatacgacacgtgtccgacaccagaaca 38846984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 12895297 - 12895214
Alignment:
Q  8 gtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||||||||| ||||| ||||| ||||||||| || || ||||   | |||| ||| ||||||| ||||||||||||||||||    
T  12895297 gtgtaattataagtgtcggtgtcggacacgacatgtatccgacatcgggacacgcctaatccgaggagtgttcgtgcttcatag 12895214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 19482739 - 19482798
Alignment:
Q  32 gacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||||||||||||| |||||  | |||| ||| ||||||| ||||||||||||||||||    
T  19482739 gacacgacacgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatag 19482798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 28964278 - 28964187
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    |||||||||||||||| | ||||| ||||| |||||||||| | || |||||  | |||| ||| ||||||| ||||| | |||||||||||    
T  28964278 taattcagtgtaattacaagtgtctgtgtcggacacgacacatatccgacactgggacacgcctaatccgaggagtgtccatgcttcatagt 28964187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 16073423 - 16073513
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||||||||| | ||||| ||||| ||||||| || |||| ||||| |  |||| ||| ||||||| ||||| | ||||||||||    
T  16073423 taattcagtgtaattacaagtgtcggtgtcggacacgatacatgtccgacactaagacacgcctaatccgaggagtgtccatgcttcatag 16073513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 46083991 - 46083917
Alignment:
Q  20 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagtgt 94  Q
    |||||||| || ||||||||||||||||||| || | |||| ||||||  ||| ||||| | |||||||||||||    
T  46083991 gtgtcagtatcggacacgacacgtgtctgacgcggggacacgccttataagaggagtgtccatgcttcatagtgt 46083917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 19097924 - 19097859
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactcctta 66  Q
    ||||||||| ||||||||| |||| |||||  ||| ||||||||||||||||| | |||| |||||    
T  19097924 taattcagtataattatatttgtcggtgtcgaacatgacacgtgtctgacacggggacacgcctta 19097859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 34306828 - 34306744
Alignment:
Q  7 agtgtaattatatgtgtcagtgtcagacacgacacgtgtctgaca-cgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||||||||| | ||||| ||||| ||||||||||||||| |||| |||| |||| ||| ||| ||| | ||||||||||||||||    
T  34306828 agtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgag-acacgcctaatctgaggaatgttcgtgcttcatag 34306744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 9996869 - 9996941
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgaga 73  Q
    ||||||||| ||||||||||| || ||||||||||  ||||||||| |||||  |||||| ||| ||| ||||    
T  9996869 taattcagtataattatatgtctcggtgtcagacataacacgtgtccgacactggaacacacctaatcggaga 9996941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10499300 - 10499260
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacac 41  Q
    ||||| |||||||||||||||||||||||| ||| ||||||    
T  10499300 taatttagtgtaattatatgtgtcagtgtcggacccgacac 10499260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 70307 - 70394
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttca 88  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||| ||||| || |||  ||| ||||||  |||||||||||||||    
T  70307 taattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccaggacatgcctaatccgatgagtgttcgtgcttca 70394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 491 - 403
Alignment:
Q  2 aattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 90  Q
    ||||||||||||||| | ||||| ||||| |||||||| |||||| |||||  | |||| ||| ||||||| ||||| |||||||||||    
T  491 aattcagtgtaattacaagtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 45560 - 45509
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacac 52  Q
    |||||||||||||||| | ||||| ||||| |||||||||||||||||||||    
T  45560 taattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacac 45509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 90872 - 90963
Alignment:
Q  1 taattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 92  Q
    ||||||||||||||||||| ||||  |||||||||| ||||||||| ||||| | ||||| ||| |||| |  |||||  ||||||||||||    
T  90872 taattcagtgtaattatatatgtcgatgtcagacacaacacgtgtccgacaccaaaacacgcctaatccaatgagtgtatgtgcttcatagt 90963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 241659 - 241724
Alignment:
Q  26 gtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    ||||| ||||||||||||||| |||||  | |||| ||| ||||||||||||| ||||||||||||    
T  241659 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 241724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 3338 - 3427
Alignment:
Q  2 aattcagtgtaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 91  Q
    |||| |||||||||| | ||||||||||| |||| ||||||||   |||||  | |||| ||| ||||||| ||||| ||||||||||||    
T  3338 aattaagtgtaattacaagtgtcagtgtcggacaagacacgtggtggacactgggacacgcctaatccgaggagtgtccgtgcttcatag 3427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 13454 - 13523
Alignment:
Q  20 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 89  Q
    ||||| ||||| ||||||||||| ||||||||| || |||| ||| |||| || ||||| ||||||||||    
T  13454 gtgtcggtgtcggacacgacacgcgtctgacactaggacacacctaatccaaggagtgtccgtgcttcat 13523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 21873 - 21804
Alignment:
Q  20 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 89  Q
    ||||| ||||| ||||||||||| ||||||||| || |||| ||| |||| || ||||| ||||||||||    
T  21873 gtgtcggtgtcggacacgacacgcgtctgacactaggacacacctaatccaaggagtgtccgtgcttcat 21804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University