View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_high_45 (Length: 210)
Name: NF13044_high_45
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_high_45 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 6e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 1544559 - 1544748
Alignment:
| Q |
10 |
aggagcagagatattttttattaaagttctgttctatgactca--------cactctaagttaacaattgaacctgaacaattgcaattttagggaagca |
101 |
Q |
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| T |
1544559 |
aggaacagggatattttttgttaaagttctgctctatgactcacagtctcacactctaagttaacaattgaaactgaacaattgcaattttagggaagca |
1544658 |
T |
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| Q |
102 |
tgtatttgaacagaaaatcacttcatagaaagttttcaaaaattgaacaaataccctactaatctccgagtcaagatcattagaaagacc |
191 |
Q |
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| T |
1544659 |
tgtatttgaacagaaaatcacttcatagaaagttttcaaaatttgaacaaataccgtactattctccgagtcaagatcattagaaagacc |
1544748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 1555378 - 1555443
Alignment:
| Q |
45 |
atgactcacactctaagttaacaattgaacctgaacaattgcaattttagggaagcatgtatttga |
110 |
Q |
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| T |
1555378 |
atgactcacactctaagttaacaattgaaactgaacaattgcagttttagggaagcatgtatttga |
1555443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 1555476 - 1555541
Alignment:
| Q |
119 |
tcacttcatagaaagttttcaaaaattgaacaaataccctactaatctccgagtcaagatcattag |
184 |
Q |
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| T |
1555476 |
tcacttcatagaaagttttcaaaaattgaacaaatatcctaccattctcctggtcaagatcattag |
1555541 |
T |
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