View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_high_48 (Length: 204)
Name: NF13044_high_48
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_high_48 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 7e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 24490232 - 24490407
Alignment:
| Q |
12 |
agattatactttagttttttggttctaagaatgagtgaaagtaagcttatagcaatgtatgttaaaaatagaatgagcattgtggttgcaaaatacattt |
111 |
Q |
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| T |
24490232 |
agattgtacttttgttttttggttctaagaatgagtgaaagtaagcttatagcaatgtatgttaaaaatagaatgagcattgtggttgcaaaatacattt |
24490331 |
T |
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| Q |
112 |
ctgaatgcattttagcctagaatagagagtggagaggatatattgtattaagatattttgatatgatgctttaatt |
187 |
Q |
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| T |
24490332 |
ctgaatgcattttagcctagaatagagagtagagaggatatattgtattaagatattttgatatgatgctttaatt |
24490407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 24468977 - 24469079
Alignment:
| Q |
12 |
agattatactttagttttttggttctaagaatgagtgaaagtaagcttatagcaatgtatgttaaaaatagaatgagcattgtggttgcaaaatacattt |
111 |
Q |
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| T |
24468977 |
agattgtacttttgttttttggttctaccaatgagtgaaattaagcttatagaaatgtatgttaaaaagagaatgagcattgtggttgcaaaatacattt |
24469076 |
T |
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| Q |
112 |
ctg |
114 |
Q |
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| T |
24469077 |
ctg |
24469079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 31151434 - 31151335
Alignment:
| Q |
12 |
agattatactttagttttttggttctaagaatgagtgaaagtaagcttatagcaatgtatgttaaaaatagaatgagcattgtggttgcaaaatacattt |
111 |
Q |
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| T |
31151434 |
agattgtaattttgttttttggttctaccaatgagtgaaagaaagtttatagatatgtatgttaataggaggaggagcattgtgattgcaaaatacattt |
31151335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 31137604 - 31137703
Alignment:
| Q |
12 |
agattatactttagttttttggttctaagaatgagtgaaagtaagcttatagcaatgtatgttaaaaatagaatgagcattgtggttgcaaaatacattt |
111 |
Q |
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||||| || ||| |||||||||||||| |||||| |||| ||| |||||| ||||||||||| | || | |||||||||| ||||||||||||||| |
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| T |
31137604 |
agattgtaattttgttttttggttctaccaatgagggaaataaagtttatagatatgtatgttaataggaggaggagcattgtgattgcaaaatacattt |
31137703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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