View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13044_high_8 (Length: 549)

Name: NF13044_high_8
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13044_high_8
NF13044_high_8
[»] chr5 (17 HSPs)
chr5 (16-541)||(12043614-12044141)
chr5 (16-143)||(41997727-41997854)
chr5 (16-143)||(42002518-42002645)
chr5 (16-143)||(557781-557907)
chr5 (16-144)||(32460426-32460554)
chr5 (26-143)||(562561-562677)
chr5 (16-143)||(36941147-36941273)
chr5 (31-145)||(3666972-3667085)
chr5 (16-143)||(36936393-36936519)
chr5 (26-143)||(21322921-21323036)
chr5 (54-143)||(23976319-23976407)
chr5 (57-141)||(14232586-14232669)
chr5 (56-143)||(24435064-24435149)
chr5 (26-89)||(13300422-13300485)
chr5 (57-143)||(32287253-32287340)
chr5 (21-143)||(36949777-36949897)
chr5 (46-143)||(31732665-31732760)
[»] scaffold0196 (1 HSPs)
scaffold0196 (172-531)||(29371-29731)
[»] chr8 (9 HSPs)
chr8 (16-143)||(31448747-31448874)
chr8 (16-143)||(4237224-4237350)
chr8 (16-143)||(4241963-4242089)
chr8 (16-143)||(43301626-43301753)
chr8 (26-143)||(8330262-8330377)
chr8 (22-145)||(42973185-42973307)
chr8 (26-111)||(25361636-25361720)
chr8 (48-143)||(21959501-21959594)
chr8 (57-144)||(37772844-37772929)
[»] chr3 (9 HSPs)
chr3 (16-143)||(8889001-8889128)
chr3 (16-143)||(8884255-8884382)
chr3 (16-143)||(3673651-3673777)
chr3 (16-143)||(3693705-3693831)
chr3 (26-143)||(8070772-8070888)
chr3 (16-143)||(3034729-3034855)
chr3 (48-143)||(28126303-28126397)
chr3 (16-141)||(35455772-35455893)
chr3 (26-143)||(10585066-10585180)
[»] scaffold0182 (1 HSPs)
scaffold0182 (16-143)||(8764-8891)
[»] chr2 (5 HSPs)
chr2 (16-143)||(10159601-10159726)
chr2 (16-143)||(35602683-35602804)
chr2 (49-143)||(30659274-30659368)
chr2 (26-143)||(6296796-6296911)
chr2 (17-143)||(30629930-30630055)
[»] scaffold0045 (1 HSPs)
scaffold0045 (16-143)||(83993-84120)
[»] chr1 (6 HSPs)
chr1 (16-143)||(3095174-3095300)
chr1 (46-145)||(14204445-14204545)
chr1 (55-140)||(17213032-17213116)
chr1 (18-140)||(27307360-27307479)
chr1 (81-143)||(8273059-8273120)
chr1 (16-89)||(40232324-40232396)
[»] chr7 (19 HSPs)
chr7 (16-144)||(9649843-9649970)
chr7 (28-143)||(13343311-13343425)
chr7 (16-143)||(47102620-47102742)
chr7 (29-134)||(23866819-23866924)
chr7 (26-143)||(10499011-10499127)
chr7 (26-143)||(10504040-10504156)
chr7 (27-141)||(13346249-13346362)
chr7 (22-145)||(8077099-8077225)
chr7 (26-144)||(27257314-27257430)
chr7 (57-115)||(19641419-19641477)
chr7 (57-142)||(10531748-10531832)
chr7 (26-87)||(18330328-18330391)
chr7 (47-137)||(1044367-1044458)
chr7 (81-143)||(9010486-9010547)
chr7 (16-73)||(11040271-11040328)
chr7 (56-143)||(40863960-40864045)
chr7 (57-143)||(40864281-40864365)
chr7 (49-139)||(47551754-47551842)
chr7 (54-143)||(40997727-40997815)
[»] chr4 (11 HSPs)
chr4 (16-144)||(13520868-13520995)
chr4 (27-142)||(31297409-31297523)
chr4 (48-145)||(55074432-55074527)
chr4 (27-144)||(26187704-26187820)
chr4 (26-143)||(34561502-34561617)
chr4 (75-143)||(39320701-39320768)
chr4 (26-143)||(3992653-3992768)
chr4 (46-143)||(7899838-7899933)
chr4 (26-137)||(15799036-15799139)
chr4 (19-146)||(1150243-1150370)
chr4 (16-89)||(41817872-41817943)
[»] scaffold0628 (2 HSPs)
scaffold0628 (16-143)||(5751-5877)
scaffold0628 (27-143)||(7530-7645)
[»] scaffold0008 (1 HSPs)
scaffold0008 (48-134)||(257753-257838)
[»] chr6 (7 HSPs)
chr6 (17-144)||(2759138-2759264)
chr6 (17-143)||(2862426-2862552)
chr6 (17-143)||(2881729-2881855)
chr6 (49-144)||(15509400-15509494)
chr6 (97-143)||(24588522-24588567)
chr6 (97-143)||(28963740-28963785)
chr6 (34-143)||(29157067-29157174)
[»] scaffold0060 (2 HSPs)
scaffold0060 (31-144)||(46856-46967)
scaffold0060 (26-143)||(51796-51911)
[»] scaffold0041 (1 HSPs)
scaffold0041 (26-143)||(34605-34720)
[»] scaffold0061 (1 HSPs)
scaffold0061 (26-143)||(48842-48957)
[»] scaffold0017 (1 HSPs)
scaffold0017 (26-143)||(149677-149792)
[»] scaffold0070 (2 HSPs)
scaffold0070 (26-143)||(59503-59617)
scaffold0070 (26-143)||(63705-63819)
[»] scaffold0015 (1 HSPs)
scaffold0015 (48-143)||(213254-213347)
[»] scaffold0484 (1 HSPs)
scaffold0484 (26-111)||(8010-8094)


Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 16 - 541
Target Start/End: Complemental strand, 12044141 - 12043614
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||||||||    
T  12044141 cactactaatgtgtgtgttccatccgatgagggactttcacttttttcaattcacacaacactagttctacccaacatgggaatttgtgtttagtctttt 12044042  T
Q  116 taactcaatttccacacatgttccaacatattgtttataataaccaataacaccttttgatgaaggtggtcttggtattagatccctatctaaattaaat 215  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12044041 taactcaatttccacacatgttccaacacattgtttataataaccaataacaccttttgatgaaggtggtcttggtattagatccctatctaaattaaat 12043942  T
Q  216 gaagacaccaatctcaagttatgctgggatttgctacattctgaaaatcaatcggcagattttttgagaagtagagtactcagaaataacaagttcatag 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12043941 gaagacaccaatctcaagttatgctgggatttgctacattctgaaaatcaatcggcagattttttgagaagtagagtactcagaaataacaagttcatag 12043842  T
Q  316 gttatcatattttttattcagtctggagtggcattagaactcaagcttatcatgttttaaaca--actctagatggttgcttggtgatggccaaaagatc 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  12043841 gttatcatattttttattcagtctggagtggcattagaactcaagcttatcatgttttaaacaacactctagatggttgcttggtgatggccaaaagatc 12043742  T
Q  414 aacttctggactcatgattggtgtggaacccccttgttgatttgtttcatattccccataacctgcatcataatcttctctctacagtgaatgattacat 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12043741 aacttctggactcatgattggtgtggaacccccttgttgatttgtttcatattccccataacctgcatcataatcttctctctacagtgaatgactacat 12043642  T
Q  514 catcaattctcaatggcacgcccctatg 541  Q
    ||||||||||||||||||||||||||||    
T  12043641 catcaattctcaatggcacgcccctatg 12043614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 41997727 - 41997854
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| |||||||||||||| ||| ||||||| |||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||||||||    
T  41997727 cactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactagttctacccaacatgggaatttgtgtttagtctttt 41997826  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    ||||||||||| ||||||||||||||||    
T  41997827 taactcaattttcacacatgttccaaca 41997854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 42002518 - 42002645
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| |||||||||||||| ||| ||||||| |||||||||||||||||||| ||||| |||||||||||||   |||||||||||||||||||    
T  42002518 cactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactagttctacccaacatatgaatttgtgtttagtctttt 42002617  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    ||||||||||||||||||||||||||||    
T  42002618 taactcaatttccacacatgttccaaca 42002645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 557781 - 557907
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| |||||||||||||| ||| ||||||| ||||||| |||||||||||| ||||| ||||||||||||||  |||||||||||||||||||    
T  557781 cactactaatgtgtgtgttccatccgatgtgggacttccactttt-tcaattcacacaacactagttctacccaacatgggaatttgtgtttagtctttt 557879  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    ||||||||||||||||||||||||||||    
T  557880 taactcaatttccacacatgttccaaca 557907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 32460554 - 32460426
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| |||||||||||||| ||| || |||| |||||||||||||||||||| ||||| ||||||||||||||  |||||||| ||||||||||    
T  32460554 cactactaatgtgtgtgttccatccgatgtggtacttccacttttttcaattcacacaacactagttctacccaacatgggaatttgtgattagtctttt 32460455  T
Q  116 taactcaatttccacacatgttccaacat 144  Q
    |||||||||||| ||||||||||||||||    
T  32460454 taactcaatttcaacacatgttccaacat 32460426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 562561 - 562677
Alignment:
Q  26 atgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatt 125  Q
    ||||||||||||||| ||| ||||||| ||||||| |||||||||||| ||||| ||||||||||||||  |||||||||||||||||||||||||||||    
T  562561 atgtgtgttccatccgatgtgggacttccactttt-tcaattcacacaacactagttctacccaacatgggaatttgtgtttagtctttttaactcaatt 562659  T
Q  126 tccacacatgttccaaca 143  Q
    ||||||||||||||||||    
T  562660 tccacacatgttccaaca 562677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 36941273 - 36941147
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| |||||||||||||| ||| ||||||| |||||||| ||||||||| | ||||| ||||||||||||||  |||||||||||||||| ||    
T  36941273 cactactaatgtgtgtgttccatccgatgtgggacttccacttttt-caattcacagaacactagttctacccaacatgggaatttgtgtttagtctgtt 36941175  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    ||||||||||||||||||||||||||||    
T  36941174 taactcaatttccacacatgttccaaca 36941147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 31 - 145
Target Start/End: Original strand, 3666972 - 3667085
Alignment:
Q  31 tgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccac 130  Q
    |||||||||| ||| ||||||| ||| |||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  3666972 tgttccatccgatgtgggacttccacctttttcaatttacacaacactatttctacacaacatgaaaatttgtgtttagtcttttt-actcaatttccac 3667070  T
Q  131 acatgttccaacata 145  Q
    |||||||||||||||    
T  3667071 acatgttccaacata 3667085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 36936519 - 36936393
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| |||||||||||| | ||| | ||||| |||| ||| ||||||||||| ||||| ||||||||||||||  |||||||||||||||| ||    
T  36936519 cactactaatgtgtgtgttccattcgatgtgagacttccactgttt-caattcacacaacactagttctacccaacatgggaatttgtgtttagtctgtt 36936421  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    ||||||||||||||||||||||||||||    
T  36936420 taactcaatttccacacatgttccaaca 36936393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 21323036 - 21322921
Alignment:
Q  26 atgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatt 125  Q
    ||||||| ||||||| ||| ||||||| |||||||||||||||||||  ||||| |||||||||   ||  |||||||||||||||  ||  ||||||||    
T  21323036 atgtgtgatccatccgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgggaatttgtgtttagtcaatt--actcaatt 21322939  T
Q  126 tccacacatgttccaaca 143  Q
    |||||| |||||||||||    
T  21322938 tccacatatgttccaaca 21322921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 23976407 - 23976319
Alignment:
Q  54 cacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 143  Q
    |||||||||||||||||||| |||| ||||||||||| || | |||||| ||||||| ||||| |||||| |||||||  ||||||||||    
T  23976407 cacttttttcaattcacacaacactgattctacccaa-ataagaatttgcgtttagtattttttactcaaattccacatttgttccaaca 23976319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 14232669 - 14232586
Alignment:
Q  57 ttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacatgttccaa 141  Q
    |||||||||||||||||  |||| | ||||||||  || ||||||||||||||| ||||||||||||||||||||  ||||||||    
T  14232669 ttttttcaattcacacaatactagtgctacccaatgtggaaatttgtgtttagt-tttttaactcaatttccacatttgttccaa 14232586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 143
Target Start/End: Complemental strand, 24435149 - 24435064
Alignment:
Q  56 cttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 143  Q
    |||||||||||||||||  ||||| |||||||||   ||  |||||||||||||||  ||  |||||||||||||| |||||||||||    
T  24435149 cttttttcaattcacactacactagttctacccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 24435064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 13300485 - 13300422
Alignment:
Q  26 atgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctaccca 89  Q
    ||||||| ||||||  ||| ||||||| |||||||||||||||||||  ||||| |||||||||    
T  13300485 atgtgtgatccatctgatgtgggacttccacttttttcaattcacactacactagttctaccca 13300422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 32287340 - 32287253
Alignment:
Q  57 ttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtcttttta-actcaatttccacacatgttccaaca 143  Q
    |||||||||||||||   ||||| |||||| |||||||| | ||||||||||||||||  |  |||||||||||||  ||||||||||    
T  32287340 ttttttcaattcacatcacactagttctactcaacatgagactttgtgtttagtctttcaaccctcaatttccacatgtgttccaaca 32287253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 36949777 - 36949897
Alignment:
Q  21 ctaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaact 120  Q
    ||||| |||| | ||||||| ||| ||||||| |||||||||||||||||||  ||||| |||  || |  |||| |||||||||||||  ||  | |||    
T  36949777 ctaatgtgtgggatccatccgatgtgggacttccacttttttcaattcacactacactagttccgcctattatgagaatttgtgtttag--ttaattact 36949874  T
Q  121 caatttccacacatgttccaaca 143  Q
    |||||| |||||||||| |||||    
T  36949875 caattttcacacatgtttcaaca 36949897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 31732665 - 31732760
Alignment:
Q  46 gggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 143  Q
    ||||||| || ||||||||||||||||  ||||| ||||| |||   ||  |||||||||||||||  ||  |||||||||||||| |||||||||||    
T  31732665 gggacttccatttttttcaattcacactacactagttctatccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 31732760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 172 - 531
Target Start/End: Original strand, 29371 - 29731
Alignment:
Q  172 ttgatgaaggtggtcttggtattagatccctatctaaattaaatgaagacaccaatctcaagttatgctgggatttgctacattctgaaaatcaatcggc 271  Q
    |||||||||||||||| |||||||||||  |||||||| |||||||||   |||| |||||| ||||||||||| || | |||||||| ||||||| |||    
T  29371 ttgatgaaggtggtctgggtattagatctttatctaaactaaatgaagcagccaacctcaagctatgctgggatatgatgcattctgacaatcaatgggc 29470  T
Q  272 agattttttgagaagtagagtactcagaaataacaagttcataggttatcatattttttattcagtctggagtggcattagaactcaagcttatcatgtt 371  Q
    | | || |||||||||||||| |||||||| || || || ||||| ||||||||||||| |||| |||||||||| |||| ||||||||| ||||||||     
T  29471 acacttcttgagaagtagagtgctcagaaacaataatttgataggctatcatattttttcttcaatctggagtggtattaaaactcaagcctatcatgtg 29570  T
Q  372 ttaaacaactctagatggttgcttggtgatggccaaaagatcaacttctggactcatgattggtgtggaaccccctt-gttgatttgtttcatattcccc 470  Q
    || |||||||| |||||| ||||||| |||||  | |  || ||||| ||||  ||||||||||| || || || || ||||| || ||||| ||||| |    
T  29571 ttgaacaactccagatggctgcttggagatgggtatagaattaacttttggaaccatgattggtgcggtactcctttggttgacttatttcaaattcctc 29670  T
Q  471 ataacctgcatcataatcttctctctacagtgaatgattacatcatcaattctcaatggca 531  Q
    | |  |||||||| |||||||| |||||||| ||||| |||||||| || |||||||||||    
T  29671 aaagtctgcatcacaatcttctttctacagttaatgactacatcataaactctcaatggca 29731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 8e-47; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 31448874 - 31448747
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| |||||||||||||| ||| ||||||| |||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||||||||    
T  31448874 cactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactagttctacccaacatgggaatttgtgtttagtctttt 31448775  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    ||||||||||||||||||||||||||||    
T  31448774 taactcaatttccacacatgttccaaca 31448747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 4237350 - 4237224
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| |||||||||||||| ||| ||||||| |||||||| ||||||||||| ||||| ||||||||||||||  |||||||||||||||| ||    
T  4237350 cactactaatgtgtgtgttccatccgatgtgggacttccacttttt-caattcacacaacactagttctacccaacatgggaatttgtgtttagtctgtt 4237252  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    ||||||||||||||||||||||||||||    
T  4237251 taactcaatttccacacatgttccaaca 4237224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 4242089 - 4241963
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| |||||||||||||| ||| ||||||| |||||||| ||||||||||| ||||| ||||||||||||||  |||||||||||||||| ||    
T  4242089 cactactaatgtgtgtgttccatccgatgtgggacttccacttttt-caattcacacaacactagttctacccaacatgggaatttgtgtttagtctgtt 4241991  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    ||||||||||||||||||||||||||||    
T  4241990 taactcaatttccacacatgttccaaca 4241963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 43301753 - 43301626
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| | |||||||||||| |||  |||||| |||||||||||||||||||| ||||| |||||||||| ||| ||||||||||||||||||||    
T  43301753 cactactaatgtatgtgttccatccgatgtaggacttccacttttttcaattcacacaacactagttctacccaagatggaaatttgtgtttagtctttt 43301654  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    |||||||||||||||| || ||||||||    
T  43301653 taactcaatttccacaaatcttccaaca 43301626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 8330377 - 8330262
Alignment:
Q  26 atgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatt 125  Q
    ||||||| ||||||| ||| |||||||||||||||||||||||||||    ||| |||||||||   ||  |||||||||||||||  ||  ||||||||    
T  8330377 atgtgtgatccatccgatgtgggactttcacttttttcaattcacactatgctagttctacccattgtgggaatttgtgtttagtcaatt--actcaatt 8330280  T
Q  126 tccacacatgttccaaca 143  Q
    |||||| |||||||||||    
T  8330279 tccacatatgttccaaca 8330262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 42973185 - 42973307
Alignment:
Q  22 taatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactc 121  Q
    ||||||||||||| ||||  ||| | ||||| ||||||||| || |||| || ||||||||||  | ||| ||  ||||||||| ||||| |||||||||    
T  42973185 taatatgtgtgtttcatctgatgtgagacttccactttttttaagtcacgcaacactaattctttctaacgtgggaatttgtgtatagtc-ttttaactc 42973283  T
Q  122 aatttccacacatgttccaacata 145  Q
    |||||   ||||||||||||||||    
T  42973284 aatttttgcacatgttccaacata 42973307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 25361720 - 25361636
Alignment:
Q  26 atgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtc 111  Q
    ||||||| ||||||| ||| ||||||| |||||||| ||||||||||  ||||| |||||||||  |||  |||||||||||||||    
T  25361720 atgtgtgatccatccgatgtgggacttccacttttt-caattcacactacactagttctacccattatgggaatttgtgtttagtc 25361636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 21959501 - 21959594
Alignment:
Q  48 gactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 143  Q
    ||||| |||||||||||||||||||  || ||||||||||||   ||  |||||||||||||||  ||  |||||||||| ||| |||||||||||    
T  21959501 gacttccacttttttcaattcacactacattaattctacccattgtgggaatttgtgtttagtcaatt--actcaatttcaacatatgttccaaca 21959594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 144
Target Start/End: Original strand, 37772844 - 37772929
Alignment:
Q  57 ttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacatgttccaacat 144  Q
    ||||||||||||||||  ||||| |||||||||   ||  |||||||||||||||  ||  |||||||||||||| ||||||||||||    
T  37772844 ttttttcaattcacactacactagttctacccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaacat 37772929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 8e-47; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 8889001 - 8889128
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| |||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  8889001 cactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactaattctacccaacatgggaatttgtgtttagtctttt 8889100  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    ||||||| ||||||||||||||||||||    
T  8889101 taactcagtttccacacatgttccaaca 8889128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 8884255 - 8884382
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| |||||||||||||| ||| ||||||| || ||||||||||||||||| ||||| ||||||||||||||  |||||||||||||||||||    
T  8884255 cactactaatgtgtgtgttccatccgatgtgggacttccatttttttcaattcacacaacactagttctacccaacatgggaatttgtgtttagtctttt 8884354  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    ||||||| ||||||||||||||||||||    
T  8884355 taactcagtttccacacatgttccaaca 8884382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 3673651 - 3673777
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| |||||||||||||| ||| ||||||| ||||||| |||||||||||| ||||| ||||||||||||||  |||||||||||||||| ||    
T  3673651 cactactaatgtgtgtgttccatccgatgtgggacttccactttt-tcaattcacacaacactagttctacccaacatgggaatttgtgtttagtctgtt 3673749  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    ||||||||||||||||||||||||||||    
T  3673750 taactcaatttccacacatgttccaaca 3673777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 3693705 - 3693831
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| |||||||||||||| ||| ||||||| ||||||| |||||||||||| || || ||||||||||||||| |||||||||||||||| ||    
T  3693705 cactactaatgtgtgtgttccatccgatgtgggacttccactttt-tcaattcacacaacattagttctacccaacatgagaatttgtgtttagtctgtt 3693803  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    ||||||||||||||||||||||||||||    
T  3693804 taactcaatttccacacatgttccaaca 3693831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 8070772 - 8070888
Alignment:
Q  26 atgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatt 125  Q
    ||||||||||||||| ||| ||||||| || ||||||||||||||||| ||||| ||||||||||||||  |||||||||||||||||||||||||||||    
T  8070772 atgtgtgttccatccgatgtgggacttcca-ttttttcaattcacacaacactagttctacccaacatgggaatttgtgtttagtctttttaactcaatt 8070870  T
Q  126 tccacacatgttccaaca 143  Q
    ||||||||||||||||||    
T  8070871 tccacacatgttccaaca 8070888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 3034729 - 3034855
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| ||||| |||||||| ||| ||||||| ||||||| |||||||||||| ||||| ||||||||||||||  |||||||||||||||| ||    
T  3034729 cactactaatgtgtgtattccatccgatgtgggacttccactttt-tcaattcacacaacactagttctacccaacatgggaatttgtgtttagtctgtt 3034827  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    ||||||||||||||||||||||||||||    
T  3034828 taactcaatttccacacatgttccaaca 3034855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 28126303 - 28126397
Alignment:
Q  48 gactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 143  Q
    |||||||||||||||||||||||||| || |  ||||||||||||| ||| |||||||||| || |||||||||||||| |||||||||| |||||    
T  28126303 gactttcacttttttcaattcacacaacattggttctacccaacataaaattttgtgtttaatc-ttttaactcaattttcacacatgtttcaaca 28126397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 35455893 - 35455772
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    ||||||||||| ||| | | ||||| ||  | ||||| |||||||||||||| ||||| ||||| |||||||||||||   |||||||||||||||  ||    
T  35455893 cactactaataggtgcgcttcatccaatatgagacttccacttttttcaatttacacaacactagttctacccaacatatgaatttgtgtttagtc-ctt 35455795  T
Q  116 taactcaatttccacacatgttccaa 141  Q
    |||||   ||||||||||||||||||    
T  35455794 taact---tttccacacatgttccaa 35455772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 10585180 - 10585066
Alignment:
Q  26 atgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatt 125  Q
    ||||||| ||||||| ||| ||||||| |||||||| ||||||||||  ||||| |||||||||   ||  |||||||||||||||  ||  ||||||||    
T  10585180 atgtgtgatccatccgatgtgggacttccacttttt-caattcacactacactagttctacccattgtgggaatttgtgtttagtcaatt--actcaatt 10585084  T
Q  126 tccacacatgttccaaca 143  Q
    | |||| ||| |||||||    
T  10585083 ttcacatatgctccaaca 10585066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 8891 - 8764
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| |||||||||||||| ||| |||| || |||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||||||||    
T  8891 cactactaatgtgtgtgttccatccgatgtgggatttccacttttttcaattcacacaacactagttctacccaacatgggaatttgtgtttagtctttt 8792  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    ||||||||||||||||||||||||||||    
T  8791 taactcaatttccacacatgttccaaca 8764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 7e-38; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 10159726 - 10159601
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    ||||||||||||||||  ||||||| ||| ||||||| |||||||||||||||||||| ||||| ||||||| ||||||  |||||||||||||||||||    
T  10159726 cactactaatatgtgt--tccatccgatgtgggacttccacttttttcaattcacacaacactagttctacctaacatgggaatttgtgtttagtctttt 10159629  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    |||||||||||||||| |||||||||||    
T  10159628 taactcaatttccacagatgttccaaca 10159601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 35602683 - 35602804
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| |||||||||||||| ||| | ||||| |||||||||||||||||||| ||||       |||||||||| |||||||||||||||||||    
T  35602683 cactactaatgtgtgtgttccatccgatgtgagacttccacttttttcaattcacacaacactg------cccaacatgagaatttgtgtttagtctttt 35602776  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    ||||||||||||||||||||||||||||    
T  35602777 taactcaatttccacacatgttccaaca 35602804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 49 - 143
Target Start/End: Original strand, 30659274 - 30659368
Alignment:
Q  49 actttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 143  Q
    |||| |||||||||||||||||||| ||||| ||||||||||||||  | ||| |||||||||||||||||||||||||||||||||||||||||    
T  30659274 acttccacttttttcaattcacacaacactagttctacccaacatgggagtttttgtttagtctttttaactcaatttccacacatgttccaaca 30659368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 6296911 - 6296796
Alignment:
Q  26 atgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatt 125  Q
    ||||||| ||||||| ||| ||| ||| |||||||||||||||||||  ||||| |||||||||   ||  |||||||||||||||  ||  ||||||||    
T  6296911 atgtgtgatccatccgatgtgggtcttccacttttttcaattcacactacactagttctacccattgtgggaatttgtgtttagtcaatt--actcaatt 6296814  T
Q  126 tccacacatgttccaaca 143  Q
    |||||| |||||||||||    
T  6296813 tccacatatgttccaaca 6296796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 30629930 - 30630055
Alignment:
Q  17 actactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtcttttt 116  Q
    |||||||||||| ||| || |||| |||   ||||| || ||||||||||||||||  ||||||||| || ||| |||  ||||| ||| || || ||||    
T  30629930 actactaatatgggtgatctatccaatgtaagacttccatttttttcaattcacactacactaattccacgcaaaatgcgaatttttgtctaatc-tttt 30630028  T
Q  117 aactcaatttccacacatgttccaaca 143  Q
    |||| | ||||||||||||||||||||    
T  30630029 aacttactttccacacatgttccaaca 30630055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 83993 - 84120
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| |||||||||||| | |||  ||||||||||| ||||||||||||||| ||||| |||||||||||||  ||||||||||||||||||||    
T  83993 cactactaatgtgtgtgttccattcaatgtaggactttcactcttttcaattcacacaacactagttctacccaacatagaaatttgtgtttagtctttt 84092  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    |||  |||||||||||||||||||||||    
T  84093 taatccaatttccacacatgttccaaca 84120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 3095174 - 3095300
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| |||||||| ||||| ||| ||||||| ||||||| |||||||||||| ||||| |||||||||||||| ||||||||||||||| | ||    
T  3095174 cactactaatgtgtgtgtttcatccgatgtgggacttccactttt-tcaattcacacaacactagttctacccaacatggaaatttgtgtttagtttgtt 3095272  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    ||||||||||||||||||||||||||||    
T  3095273 taactcaatttccacacatgttccaaca 3095300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 14204545 - 14204445
Alignment:
Q  46 gggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtt--tagtctttttaactcaatttccacacatgttccaaca 143  Q
    ||||||| |||||||||||||||||||| ||||| ||| ||||||||| | ||||||||||  ||| |||||| ||||||||||||||||||||||||||    
T  14204545 gggacttccacttttttcaattcacacaacactagttccacccaacataagaatttgtgtttatagacttttt-actcaatttccacacatgttccaaca 14204447  T
Q  144 ta 145  Q
    ||    
T  14204446 ta 14204445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 140
Target Start/End: Complemental strand, 17213116 - 17213032
Alignment:
Q  55 acttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacatgttcca 140  Q
    ||||||||||||||||||| ||||  ||||||| || ||  |||||||||| || || |||||||||||||| |||||||||||||    
T  17213116 acttttttcaattcacacaacacttgttctacctaagatagaaatttgtgtctaatc-ttttaactcaattttcacacatgttcca 17213032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 27307479 - 27307360
Alignment:
Q  18 ctactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtcttttta 117  Q
    ||||||||||| ||  ||||||| ||   |||||| ||||||||||||||||||||  ||||  |||| ||||  ||  ||||||||||||||||||| |    
T  27307479 ctactaatatgggttatccatccaatataggacttccacttttttcaattcacaca--actaggtctatccaatgtgggaatttgtgtttagtctttt-a 27307383  T
Q  118 actcaatttccacacatgttcca 140  Q
     |||||| |||||||||||||||    
T  27307382 cctcaatatccacacatgttcca 27307360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 8273120 - 8273059
Alignment:
Q  81 ttctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 143  Q
    ||||||||||| ||  |||||||||||| | |||||||||||||||||||||||||| |||||    
T  8273120 ttctacccaacgtgggaatttgtgtttatt-tttttaactcaatttccacacatgtttcaaca 8273059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 40232396 - 40232324
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctaccca 89  Q
    ||||||||| ||||||| ||||||| ||| ||||||| |||||||||||||||||||  || || |||||||||    
T  40232396 cactactaa-atgtgtgatccatccgatgtgggacttccacttttttcaattcacactacattagttctaccca 40232324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 9649970 - 9649843
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| ||||| || ||||| ||| || |||| |||||||||||||||||||| ||||| ||||||||||||||  ||||||||||||||| |||    
T  9649970 cactactaatgtgtgtatttcatccgatgtggaacttccacttttttcaattcacacaacactagttctacccaacatgggaatttgtgtttagtc-ttt 9649872  T
Q  116 taactcaatttccacacatgttccaacat 144  Q
    |||||||||||||||||||||||||||||    
T  9649871 taactcaatttccacacatgttccaacat 9649843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 13343425 - 13343311
Alignment:
Q  28 gtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttc 127  Q
    ||||||||||||| ||| ||||| | |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| ||| |||||| ||||||||    
T  13343425 gtgtgttccatccgatgcgggacatccacttttttcaattcacacaacactagttctacccaacgtgaaaatttgtgttttgtc-ttttaattcaatttc 13343327  T
Q  128 cacacatgttccaaca 143  Q
    ||||||||||||||||    
T  13343326 cacacatgttccaaca 13343311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 47102620 - 47102742
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    ||||||| || ||||||||||||||  |  ||||||| |||||||||||||| ||||| |||     ||||||||||||  |||||||||||||||||||    
T  47102620 cactactgatgtgtgtgttccatccgctatgggacttccacttttttcaatttacacaacac-----ctacccaacatgggaatttgtgtttagtctttt 47102714  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    ||||||||||||||||||||||||||||    
T  47102715 taactcaatttccacacatgttccaaca 47102742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 23866819 - 23866924
Alignment:
Q  29 tgtgttccatcctatgagggactttcactttt-ttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttc 127  Q
    |||||||||||| ||| ||||||| ||||||| ||||||||||||| ||||| ||||||||||||||  ||||||||||||||| ||||||||||||||     
T  23866819 tgtgttccatccaatgtgggacttccactttttttcaattcacacaacactagttctacccaacatgggaatttgtgtttagtc-ttttaactcaatttt 23866917  T
Q  128 cacacat 134  Q
    |||||||    
T  23866918 cacacat 23866924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 10499127 - 10499011
Alignment:
Q  26 atgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatt 125  Q
    ||||||||||||||| ||  ||||||| |||||||||||||||||||| ||||| |||||||  || |  |||||| ||||||||| |||||| ||||||    
T  10499127 atgtgtgttccatccaattcgggacttccacttttttcaattcacacaacactagttctaccttacgttgaaatttatgtttagtc-ttttaattcaatt 10499029  T
Q  126 tccacacatgttccaaca 143  Q
    ||||||||||||||||||    
T  10499028 tccacacatgttccaaca 10499011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 10504156 - 10504040
Alignment:
Q  26 atgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatt 125  Q
    ||||||||||||||| ||  ||||||| |||||||||||||||||||| ||||| |||||||  || |  |||||| ||||||||| |||||| ||||||    
T  10504156 atgtgtgttccatccaattcgggacttccacttttttcaattcacacaacactagttctaccttacgttgaaatttatgtttagtc-ttttaattcaatt 10504058  T
Q  126 tccacacatgttccaaca 143  Q
    ||||||||||||||||||    
T  10504057 tccacacatgttccaaca 10504040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 13346362 - 13346249
Alignment:
Q  27 tgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaattt 126  Q
    |||||||||||||| | | ||||  | || ||||||||||||||||| ||||| ||||||| ||| ||||||||| ||||| ||| |||||| |||||||    
T  13346362 tgtgtgttccatccaacgcgggatatccatttttttcaattcacacaacactagttctaccaaacgtgaaaatttatgttttgtc-ttttaattcaattt 13346264  T
Q  127 ccacacatgttccaa 141  Q
    |||||||||||||||    
T  13346263 ccacacatgttccaa 13346249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 8077099 - 8077225
Alignment:
Q  22 taatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt---taa 118  Q
    |||| |||||||||||||| ||| |  |||||| | ||||||||||||||||  |||  ||| |||||||||   ||||||| |||||||||||   |||    
T  8077099 taatgtgtgtgttccatccgatgtgaaactttcgcctttttcaattcacacagaactggttccacccaacataggaatttgtctttagtcttttttttaa 8077198  T
Q  119 ctcaatttccacacatgttccaacata 145  Q
    |||||||||||||||||||||||||||    
T  8077199 ctcaatttccacacatgttccaacata 8077225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 26 - 144
Target Start/End: Original strand, 27257314 - 27257430
Alignment:
Q  26 atgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatt 125  Q
    ||||||| ||||||  ||| ||||||| |||||||||||||||||||  ||||| |||||||||   ||  |||||||||||||||  ||  ||||||||    
T  27257314 atgtgtgatccatctgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgggaatttgtgtttagtcaatt--actcaatt 27257411  T
Q  126 tccacacatgttccaacat 144  Q
    |||||| ||||||||||||    
T  27257412 tccacatatgttccaacat 27257430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 19641419 - 19641477
Alignment:
Q  57 ttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    ||||| ||||||||||| ||||||||||||||||||||  |||||||||||| ||||||    
T  19641419 tttttccaattcacacagcactaattctacccaacatgggaatttgtgtttactctttt 19641477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 10531832 - 10531748
Alignment:
Q  57 ttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacatgttccaac 142  Q
    |||||||||||| ||||  |||| |||||||| || ||||||||||||||||||| |||||| ||||||| |||||| ||| ||||    
T  10531832 ttttttcaattcgcacaaaactagttctaccctacgtgaaaatttgtgtttagtc-ttttaattcaattttcacacaagtttcaac 10531748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 18330391 - 18330328
Alignment:
Q  26 atgtgtgttccatccta--tgagggactttcacttttttcaattcacacaccactaattctacc 87  Q
    |||||||||| ||||||  || ||||||| |||||||||||||||||||| |||||||||||||    
T  18330391 atgtgtgttctatcctacgtgtgggacttccacttttttcaattcacacaacactaattctacc 18330328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 1044367 - 1044458
Alignment:
Q  47 ggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtcttttta-actcaatttccacacatgtt 137  Q
    ||||||||||||||||||||||||||  ||||| |||||  |||  ||| |  |||||||||||||||| |  |||||||||||||||||||    
T  1044367 ggactttcacttttttcaattcacaccacactagttctagacaatgtgagacattgtgtttagtcttttaactctcaatttccacacatgtt 1044458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 9010486 - 9010547
Alignment:
Q  81 ttctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 143  Q
    ||||||||||||| ||||||| ||||||| | |||||||||||||| |||||||||| |||||    
T  9010486 ttctacccaacataaaaatttatgtttagac-ttttaactcaattttcacacatgtttcaaca 9010547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 11040328 - 11040271
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacaca 73  Q
    ||||| ||||||||||||||||||  ||  | ||||||||||||||||||||||||||    
T  11040328 cactattaatatgtgtgttccatctaatatgagactttcacttttttcaattcacaca 11040271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 143
Target Start/End: Complemental strand, 40864045 - 40863960
Alignment:
Q  56 cttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 143  Q
    |||||||||||||||||  ||||| |||||||||   ||  |||||||||||||||  ||  |||||||||||||| |||||||||||    
T  40864045 cttttttcaattcacactacactagttctacccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 40863960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 40864365 - 40864281
Alignment:
Q  57 ttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 143  Q
    ||||||||||||||||  ||||| |||||||||   ||  |||||||||||||||  ||  |||||||||||||| |||||||||||    
T  40864365 ttttttcaattcacactacactagttctacccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 40864281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 47551842 - 47551754
Alignment:
Q  49 actttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacatgttcc 139  Q
    |||| |||||||||||||| ||||| ||| ||||||||  ||  ||||||||| |||||  |  |||||||||||||||||| ||||||||    
T  47551842 acttccacttttttcaattgacacaacacaaattctacataatgtgaaaatttatgtttcat--ttttaactcaatttccacgcatgttcc 47551754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 40997815 - 40997727
Alignment:
Q  54 cacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 143  Q
    |||||||||| ||||||||  ||||| || |||||||  |   ||||||| ||||||||||| ||||||||||| |||| ||||||||||    
T  40997815 cacttttttcgattcacactacactagttttacccaatgtaggaatttgtatttagtctttt-aactcaatttctacacttgttccaaca 40997727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 13520995 - 13520868
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||| ||||| || ||||| ||| || |||| |||||||||||||||||||| ||||| ||||||||||||||  ||||||||||||||| |||    
T  13520995 cactactaatgtgtgtatttcatccgatgtggaacttccacttttttcaattcacacaacactagttctacccaacatgggaatttgtgtttagtc-ttt 13520897  T
Q  116 taactcaatttccacacatgttccaacat 144  Q
    |||||||||||||||||||||||||||||    
T  13520896 taactcaatttccacacatgttccaacat 13520868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 31297523 - 31297409
Alignment:
Q  27 tgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaattt 126  Q
    |||||||||||||| |||  | |||| |||||||| ||||||||||| ||||| ||||||||||||||| ||||||||||||| |||||| |||||||||    
T  31297523 tgtgtgttccatccgatgtagaacttccacttttt-caattcacacaacactagttctacccaacatgagaatttgtgtttagccttttttactcaattt 31297425  T
Q  127 ccacacatgttccaac 142  Q
    |||| |||||||||||    
T  31297424 ccacgcatgttccaac 31297409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 55074432 - 55074527
Alignment:
Q  48 gactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacatgttccaacata 145  Q
    |||||||||||||||||||||||||| ||||||||||||| || || |||||||||||||||||  |||||||||||||  || ||||||||||||||    
T  55074432 gactttcacttttttcaattcacacaacactaattctaccaaatataaaaatttgtgtttagtc--tttaactcaatttttacgcatgttccaacata 55074527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 144
Target Start/End: Complemental strand, 26187820 - 26187704
Alignment:
Q  27 tgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaattt 126  Q
    |||||| ||||||  ||| |||| |||||| |||||||||||  ||| |||||||||| ||| || ||| |||||||||  |||| ||||||||||||||    
T  26187820 tgtgtgatccatctcatgtgggaatttcacatttttcaattctgacaacactaattcttccctacgtgagaatttgtgtaaagtc-ttttaactcaattt 26187722  T
Q  127 ccacacatgttccaacat 144  Q
    ||||||||||| ||||||    
T  26187721 ccacacatgtttcaacat 26187704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 34561502 - 34561617
Alignment:
Q  26 atgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatt 125  Q
    ||||||| ||||||| | | ||||||| |||||||||||||||||||   ||||||||||||||  ||   |||||||||||||||  ||  ||||||||    
T  34561502 atgtgtgatccatccgacgtgggacttccacttttttcaattcacactatactaattctacccattataggaatttgtgtttagtcaatt--actcaatt 34561599  T
Q  126 tccacacatgttccaaca 143  Q
    |||||| |||||||||||    
T  34561600 tccacaaatgttccaaca 34561617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 75 - 143
Target Start/End: Original strand, 39320701 - 39320768
Alignment:
Q  75 cactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 143  Q
    ||||| ||||||||||||||  ||||||| |||| |||||| |||||||||||||||||||||||||||    
T  39320701 cactagttctacccaacatgcgaatttgtatttaatctttt-aactcaatttccacacatgttccaaca 39320768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 3992768 - 3992653
Alignment:
Q  26 atgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatt 125  Q
    ||||||| ||||||| ||| ||||||| ||| |||||||||||||||  ||||| |||||||||   ||  |||||||||||||||  ||  ||||||||    
T  3992768 atgtgtgatccatccgatgtgggacttccacctttttcaattcacaccacactagttctacccattgtgggaatttgtgtttagtcaatt--actcaatt 3992671  T
Q  126 tccacacatgttccaaca 143  Q
    ||| || |||||||||||    
T  3992670 tccgcatatgttccaaca 3992653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 7899933 - 7899838
Alignment:
Q  46 gggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 143  Q
    ||||||| |||||||||||||||||||  ||||| |||||||||   ||  |||||||||||||||  ||  |||||||||||||| |||||||||||    
T  7899933 gggacttccacttttttcaattcacaccacactagttctacccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 7899838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 15799139 - 15799036
Alignment:
Q  26 atgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatt 125  Q
    |||||||||||||| |||  || |||| ||||||||| ||| |||||| ||||| |||||||    |||  |||||||||||||||||   |||||||||    
T  15799139 atgtgtgttccatcttatatggaacttccacttttttaaat-cacacaacactagttctacc----atgggaatttgtgtttagtctt---aactcaatt 15799048  T
Q  126 tccacacatgtt 137  Q
    ||||||||||||    
T  15799047 tccacacatgtt 15799036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 1150370 - 1150243
Alignment:
Q  19 tactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaa 118  Q
    ||||||| |||||| || |||||||  |  |||| || ||||||  ||||||||| ||||||||||| | ||  ||| |  ||||||||| |||||        
T  1150370 tactaatgtgtgtgatctatcctatatgaaacttccatttttttttattcacacaacactaattctatctaatgtgagacattgtgtttaatctttcact 1150271  T
Q  119 ctcaatttccacacatgttccaacatat 146  Q
    ||||||||||||||||||||||||||||    
T  1150270 ctcaatttccacacatgttccaacatat 1150243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 41817872 - 41817943
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctaccca 89  Q
    |||||||||||||||   ||||||| ||| || |||| |||||||||||||||||||  || ||||||||||||    
T  41817872 cactactaatatgtga--tccatccgatgtggaacttccacttttttcaattcacactacattaattctaccca 41817943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 5751 - 5877
Alignment:
Q  16 cactactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    |||||||||  ||||||||||||   ||| |||||||||| ||||||||||||||||| ||||| ||||||| || |||| ||||||||||||||  |||    
T  5751 cactactaaagtgtgtgttccatttgatgtgggactttcatttttttcaattcacacaacactagttctaccaaatatgagaatttgtgtttagt-attt 5849  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    ||||||||||||||||||||||||||||    
T  5850 taactcaatttccacacatgttccaaca 5877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 7530 - 7645
Alignment:
Q  27 tgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaattt 126  Q
    |||||||||||||| ||| ||||||| ||||||||| ||||||||||  |||| ||||||| |||| || |||||||||||  |   |||||||||||||    
T  7530 tgtgtgttccatccgatgtgggacttccacttttttaaattcacacaatactagttctaccaaacaagagaatttgtgtttcct-actttaactcaattt 7628  T
Q  127 ccacacatgttccaaca 143  Q
    |||||||||||||||||    
T  7629 ccacacatgttccaaca 7645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 257753 - 257838
Alignment:
Q  48 gactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacat 134  Q
    |||||||||||||||||||||||||| || || |||||| |||||| | ||||||||||||||| ||||||||||||||||||||||    
T  257753 gactttcacttttttcaattcacacaacattagttctactcaacataagaatttgtgtttagtc-ttttaactcaatttccacacat 257838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 2759264 - 2759138
Alignment:
Q  17 actactaatatgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtcttttt 116  Q
    ||||||||| ||| |||||||| | ||| ||||||||||| |||||||||||||||  ||||| || || |||||||  ||| ||||||||| || ||||    
T  2759264 actactaatgtgtatgttccattcgatgtgggactttcacatttttcaattcacactacactagttttatccaacatagaaaattgtgtttaatc-tttt 2759166  T
Q  117 aactcaatttccacacatgttccaacat 144  Q
    |||||||||| ||| |||||||||||||    
T  2759165 aactcaattttcacgcatgttccaacat 2759138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 2862552 - 2862426
Alignment:
Q  17 actactaatatgtgtgttccatcctatgagggactttcacttttttc-aattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    ||||||| ||||||||  |||||| |||  |||||| |||||||||  |||||||||| ||||||||||||| ||  ||| ||||||||| |||| ||||    
T  2862552 actactattatgtgtgcaccatccgatgtaggacttccacttttttttaattcacacaacactaattctaccaaatgtgagaatttgtgtctagt-tttt 2862454  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    |||||||||||  |||||||||||||||    
T  2862453 taactcaatttttacacatgttccaaca 2862426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 2881855 - 2881729
Alignment:
Q  17 actactaatatgtgtgttccatcctatgagggactttcacttttttc-aattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttt 115  Q
    ||||||| ||||||||  |||||| |||  |||||| |||||||||  |||||||||| ||||| ||||||| ||  ||| ||||||||| |||| ||||    
T  2881855 actactattatgtgtgcaccatccgatgtaggacttccacttttttttaattcacacaacactagttctaccaaatgtgagaatttgtgtctagt-tttt 2881757  T
Q  116 taactcaatttccacacatgttccaaca 143  Q
    |||||||||||  |||||||||||||||    
T  2881756 taactcaatttttacacatgttccaaca 2881729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 15509400 - 15509494
Alignment:
Q  49 actttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacatgttccaacat 144  Q
    |||| |||||||||||||||||| |  |||| |||||| |||||   |||||||||||||||| |||||||| ||||| |||| ||||||||||||    
T  15509400 acttccacttttttcaattcacataatactagttctactcaacagagaaatttgtgtttagtc-ttttaacttaattttcacatatgttccaacat 15509494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 24588567 - 24588522
Alignment:
Q  97 aatttgtgtttagtctttttaactcaatttccacacatgttccaaca 143  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  24588567 aatttgtgtttagtcttttta-ctcaatttccacacatgttccaaca 24588522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 28963785 - 28963740
Alignment:
Q  97 aatttgtgtttagtctttttaactcaatttccacacatgttccaaca 143  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||    
T  28963785 aatttgtgtttggtctttt-aactcaatttccacacatgttccaaca 28963740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 29157174 - 29157067
Alignment:
Q  34 tccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacaca 133  Q
    ||||||| |||  |||||| || |||||||||||||||||  ||| ||||||||||| |||  |||||||||| |||| |||||||| |||||| |  ||    
T  29157174 tccatccaatgtaggacttccatttttttcaattcacacaa-acttattctacccaatatgggaatttgtgttcagtc-ttttaacttaatttctatgca 29157077  T
Q  134 tgttccaaca 143  Q
    ||||||||||    
T  29157076 tgttccaaca 29157067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 46967 - 46856
Alignment:
Q  31 tgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccac 130  Q
    |||||||||| ||| ||||||| |||||||||||||||||||  ||||| |||||||||   |||||||||||||||||||  ||  ||||||| |||||    
T  46967 tgttccatccgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgaaaatttgtgtttagtcaatt--actcaatctccac 46870  T
Q  131 acatgttccaacat 144  Q
    | ||||||||||||    
T  46869 atatgttccaacat 46856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 51911 - 51796
Alignment:
Q  26 atgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatt 125  Q
    ||||||| ||||||| | | | ||||| |||||||||||||||||||  |||||||||||||||   ||  |||||||||||||||  ||  ||||||||    
T  51911 atgtgtgatccatccgacgtgtgacttccacttttttcaattcacactacactaattctacccattgtgggaatttgtgtttagtcaatt--actcaatt 51814  T
Q  126 tccacacatgttccaaca 143  Q
    | |||| |||||||||||    
T  51813 ttcacatatgttccaaca 51796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 34720 - 34605
Alignment:
Q  26 atgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatt 125  Q
    ||||||| ||||| | ||| ||||||| |||||||||||||||||||  ||||| |||||||||   ||  |||||||||||||||  ||  ||||||||    
T  34720 atgtgtgatccatacgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgggaatttgtgtttagtcaatt--actcaatt 34623  T
Q  126 tccacacatgttccaaca 143  Q
    |||||| |||||||||||    
T  34622 tccacatatgttccaaca 34605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 48957 - 48842
Alignment:
Q  26 atgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatt 125  Q
    ||||||| ||||||| ||| ||||||| |||||||||||||||||||  ||||| |||| ||||   || |||||||| |||||||   |  ||||||||    
T  48957 atgtgtgatccatccgatgtgggacttccacttttttcaattcacactacactagttcttcccattgtggaaatttgtatttagtcaagt--actcaatt 48860  T
Q  126 tccacacatgttccaaca 143  Q
    |||||| |||||||||||    
T  48859 tccacatatgttccaaca 48842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 149677 - 149792
Alignment:
Q  26 atgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatt 125  Q
    ||||||| ||||||| ||| ||||||| |||||||||||||||||||  ||||| |||| ||||   || |||||||| |||||||   |  ||||||||    
T  149677 atgtgtgatccatccgatgtgggacttccacttttttcaattcacactacactagttcttcccattgtggaaatttgtatttagtcaagt--actcaatt 149774  T
Q  126 tccacacatgttccaaca 143  Q
    |||||| |||||||||||    
T  149775 tccacatatgttccaaca 149792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 59503 - 59617
Alignment:
Q  26 atgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatt 125  Q
    ||||||| ||||||| ||| |||| || |||||||| ||||||||||  ||||| |||||||||   ||  |||||||||||||||  ||  ||||||||    
T  59503 atgtgtgatccatccgatgtgggatttccacttttt-caattcacactacactagttctacccattgtgggaatttgtgtttagtcaatt--actcaatt 59599  T
Q  126 tccacacatgttccaaca 143  Q
    |||||| |||||||||||    
T  59600 tccacatatgttccaaca 59617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 63705 - 63819
Alignment:
Q  26 atgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatt 125  Q
    ||||||| ||||||| ||| |||| || |||||||| ||||||||||  ||||| |||||||||   ||  |||||||||||||||  ||  ||||||||    
T  63705 atgtgtgatccatccgatgtgggatttccacttttt-caattcacactacactagttctacccattgtgggaatttgtgtttagtcaatt--actcaatt 63801  T
Q  126 tccacacatgttccaaca 143  Q
    |||||| |||||||||||    
T  63802 tccacatatgttccaaca 63819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 143
Target Start/End: Complemental strand, 213347 - 213254
Alignment:
Q  48 gactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 143  Q
    ||||| |||||||||||||||||||  || ||||||||||||   ||  |||||||||||||||  ||  |||||||||| ||| |||||||||||    
T  213347 gacttccacttttttcaattcacactacattaattctacccattgtgggaatttgtgtttagtcaatt--actcaatttcaacatatgttccaaca 213254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 8010 - 8094
Alignment:
Q  26 atgtgtgttccatcctatgagggactttcacttttttcaattcacacaccactaattctacccaacatgaaaatttgtgtttagtc 111  Q
    ||||||| ||||||| ||| ||||||| ||||||| ||||||| |||  ||||| |||||||||  |||  |||||||||||||||    
T  8010 atgtgtgatccatccgatgtgggacttccactttt-tcaattctcactacactagttctacccattatgggaatttgtgtttagtc 8094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University