View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_high_9 (Length: 537)
Name: NF13044_high_9
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_high_9 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 7 - 537
Target Start/End: Original strand, 7753774 - 7754305
Alignment:
| Q |
7 |
tagataatactcaattatgttaatttataaatccttatagctaataggtgtacctgaaagggctttttcaatatcatagaactatgaggtaacttgaaat |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7753774 |
tagagaatactcaattatgttaatttataaatccttatagctaataggtgtacctgaaagggctttttcaatatcatagaactatgaggtaacttgaaat |
7753873 |
T |
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| Q |
107 |
caacaattctgtatggataaaaatttagtgggaaatcctttgaagggtagcacttccaatcgagtagccgtaaattatttggcaaatagctaggtcctga |
206 |
Q |
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| T |
7753874 |
caacaattctgtatggataaaaatttagtgggaaatcctttgaagggtagcacttccaatcgagtagccgtaaattatttggcaaatagctaggtcctga |
7753973 |
T |
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| Q |
207 |
tgaaaataatgtattccttacaatcaaaattctgaggtttttc-atcttcttaaaggcagaataagcccaataatctactttttcttgttttgggggatg |
305 |
Q |
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| T |
7753974 |
tgaaaataatgtattccttacaatcaaaattctgaggtttttctatcttcttaaaggcagaataagcccaataatctactttttcttgttttgggggatg |
7754073 |
T |
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| Q |
306 |
aagcatcattccttctactttagtacttccctaaagaaaatacatgnnnnnnnnnnnntacattaagaacaaaattcttaccaatagaacttagtacatg |
405 |
Q |
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| T |
7754074 |
aagcatcattccttctactttagtacttccctaaagaaaatacatgaaaaataaaaaatacattaagaacaaaattcttaccaatagaacttagtacatg |
7754173 |
T |
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| Q |
406 |
ccaaagttcaaaaataaaaaggtctattaagaaagtaaaaatgatataattcttaccaaatttcctttcagtacatcaagaacatctttatgagaccaca |
505 |
Q |
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| T |
7754174 |
ccaaagttcaaaaataaaaaggtctattaagaaagtaaagatgatataattcttaccaaatttcctttcagtacatcaagaacatctttatgagaccaca |
7754273 |
T |
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| Q |
506 |
atctgctacgttcaccagggtttgatgttgat |
537 |
Q |
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| T |
7754274 |
atctgctacgttcaccagggtttgatgttgat |
7754305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 58 - 338
Target Start/End: Original strand, 7837373 - 7837653
Alignment:
| Q |
58 |
acctgaaagggctttttcaatatcatagaactatgaggtaacttgaaatcaacaattctgtatggataaaaatttagtgggaaatcctttgaagggtagc |
157 |
Q |
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| T |
7837373 |
acctgaaagggctttttcaatatcatagagctatgaggtaacttgaagtcaacgattttgtatggataaaaatttggcgggaaatcctttgatgggtagc |
7837472 |
T |
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| Q |
158 |
acttccaatcgagtagccgtaaattatttggcaaatagctaggtcctgatgaaaataatgtattccttacaatcaaaattctgaggtttttcatcttctt |
257 |
Q |
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||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
7837473 |
acttccaatcgagtagccgtaaactattcggcaaataactaggtcctgatgaaaatactgtattcctaacaatcaaaattctgagatttttcatcttctt |
7837572 |
T |
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| Q |
258 |
aaaggcagaataagcccaataatctactttttcttgttttgggggatgaagcatcattccttctactttagtacttcccta |
338 |
Q |
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| T |
7837573 |
aaaggcagcatcgtcccaatgatctactttttcttgttttgggggatgaagcattatgccttcaactgcagtacttcccta |
7837653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 70 - 351
Target Start/End: Original strand, 7760956 - 7761237
Alignment:
| Q |
70 |
tttttcaatatcatagaactatgaggtaacttgaaatcaacaattctgtatggataaaaatttagtgggaaatcctttgaagggtagcacttccaatcga |
169 |
Q |
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| T |
7760956 |
tttttcaatatcatcgagctatgaggcaacttgaagtcaaccattctgtatggataaaaatctggcgggaaattcttcgatgggtaccacttccaatcaa |
7761055 |
T |
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| Q |
170 |
gtagccgtaaattatttggcaaatagctaggtcctgatgaaaataatgtattccttacaatcaaaattctgaggtttttcatcttcttaaaggcagaata |
269 |
Q |
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| T |
7761056 |
gtagccgtaaactattcggcaaataactaggtccaaatgaaaacaatgtattccttacaatcaaaattctgaggtttttcatcttttgaaaggcattata |
7761155 |
T |
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| Q |
270 |
agcccaataatctactttttcttgttttgggggatgaagcatcattccttctactttagtacttccctaaagaaaatacatg |
351 |
Q |
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| T |
7761156 |
ggcccaatgatctactttctcttgttttgggggatgaagcattattccttcaactgtggtacttccctatacataatacatg |
7761237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 404 - 533
Target Start/End: Original strand, 7761271 - 7761400
Alignment:
| Q |
404 |
tgccaaagttcaaaaataaaaaggtctattaagaaagtaaaaatgatataattcttaccaaatttcctttcagtacatcaagaacatctttatgagacca |
503 |
Q |
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|||||||||| ||||| | |||||| |||||| |||||||||||||||||||||| || || ||||||||||||||| | |||||||| | ||||||||| |
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| T |
7761271 |
tgccaaagttaaaaaaaagaaaggtatattaacaaagtaaaaatgatataattctcactaagtttcctttcagtacaccgagaacatcgtgatgagacca |
7761370 |
T |
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| Q |
504 |
caatctgctacgttcaccagggtttgatgt |
533 |
Q |
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| T |
7761371 |
taatctgctgcgttcaccagggtttgatgt |
7761400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 454 - 530
Target Start/End: Original strand, 7837738 - 7837814
Alignment:
| Q |
454 |
attcttaccaaatttcctttcagtacatcaagaacatctttatgagaccacaatctgctacgttcaccagggtttga |
530 |
Q |
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| T |
7837738 |
attcttaccaagtttcctttcagcacatcaagagcatctttatgagaccataacctgctgcgttcaccagggtttga |
7837814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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