View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13044_low_12 (Length: 492)

Name: NF13044_low_12
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13044_low_12
NF13044_low_12
[»] chr6 (4 HSPs)
chr6 (15-140)||(6956702-6956827)
chr6 (254-481)||(6956942-6957169)
chr6 (369-415)||(11321604-11321650)
chr6 (370-407)||(26588611-26588648)
[»] scaffold0024 (1 HSPs)
scaffold0024 (15-83)||(14150-14218)
[»] chr1 (6 HSPs)
chr1 (369-467)||(47132810-47132907)
chr1 (369-415)||(23291778-23291824)
chr1 (369-415)||(26535305-26535351)
chr1 (369-410)||(1742191-1742232)
chr1 (369-410)||(31918900-31918941)
chr1 (433-477)||(24597401-24597445)
[»] chr2 (4 HSPs)
chr2 (369-478)||(43397194-43397302)
chr2 (369-415)||(4904281-4904327)
chr2 (369-415)||(36691792-36691837)
chr2 (428-464)||(10929636-10929672)
[»] chr5 (2 HSPs)
chr5 (369-464)||(11977023-11977118)
chr5 (369-415)||(8096633-8096679)
[»] chr7 (3 HSPs)
chr7 (369-415)||(37837594-37837640)
chr7 (428-478)||(45349873-45349923)
chr7 (428-477)||(3394438-3394487)
[»] chr8 (1 HSPs)
chr8 (428-478)||(3673408-3673458)
[»] chr3 (1 HSPs)
chr3 (369-415)||(47896059-47896105)
[»] chr4 (2 HSPs)
chr4 (369-410)||(9713835-9713876)
chr4 (369-410)||(22305718-22305759)


Alignment Details
Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 6956702 - 6956827
Alignment:
Q  15 aatttgaacaagtaacaatcaatttcaattaattacacatttggtccagtaatatcaggaggtaatacttgaatgaatatgttatgatttaagatcattt 114  Q
    ||||||| ||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6956702 aatttgaccaaataacaatcaatttcaattaattacacatttgttcaagtaatatcaggaggtaatacttgaatgaatatgttatgatttaagatcattt 6956801  T
Q  115 aaatatgaagactcaaataaactaca 140  Q
    ||||||||||||||||||||||||||    
T  6956802 aaatatgaagactcaaataaactaca 6956827  T

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Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 254 - 481
Target Start/End: Original strand, 6956942 - 6957169
Alignment:
Q  254 gtttgaaaaactctacattttatatatgttctttttctcggtcagtcatcgaggaatgattgttttaggtctctttgac--agagttattgttctgcann 351  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||  |||||||| ||||||        
T  6956942 gtttgaaaaactctacagtttatatatgttctttttctcggtcactcatcgaggaatgattgttttatgtctctttgacatagagttatcgttctgattt 6957041  T
Q  352 nnnnnnnnnnnnnnnnncaatctaaataagtggtttctacatatattaagttttttcttatgtgnnnnnnnngtggtttcgtcgtctgattgtggtgttg 451  Q
                     |||||| |||||||||||| |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  6957042 tttttatcttcttttttcaatct-aataagtggtttttacatatattaagttttttcttatgtg-tttttccgtggtttcgtcgtctgattgtggtgttg 6957139  T
Q  452 tgttgttcgtcgttttatgtggtgtttcat 481  Q
    ||||||||||||||||||||||||||||||    
T  6957140 tgttgttcgtcgttttatgtggtgtttcat 6957169  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 415
Target Start/End: Complemental strand, 11321650 - 11321604
Alignment:
Q  369 caatctaaataagtggtttctacatatattaagttttttcttatgtg 415  Q
    |||||||||||||||||||  ||||||||||||||||||||| ||||    
T  11321650 caatctaaataagtggttttcacatatattaagttttttcttttgtg 11321604  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 407
Target Start/End: Complemental strand, 26588648 - 26588611
Alignment:
Q  370 aatctaaataagtggtttctacatatattaagtttttt 407  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  26588648 aatctaaataagtggtttccacatatatcaagtttttt 26588611  T

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Target: scaffold0024 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 14218 - 14150
Alignment:
Q  15 aatttgaacaagtaacaatcaatttcaattaattacacatttggtccagtaatatcaggaggtaatact 83  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||    
T  14218 aatttgaccaagtaacaatcaattacaattaattacacatttggtcaagtaatatcagtaggtaatact 14150  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 467
Target Start/End: Original strand, 47132810 - 47132907
Alignment:
Q  369 caatctaaataagtggtttctacatatattaagttttttcttatgtgnnnnnnnngtggtttcgtcgtctgattgtggtgttgtgttgttcgtcgtttt 467  Q
    ||||||||||||||| ||||||||||||| |||| ||||||| ||||        ||| ||||||||||||| || || ||||||||||||||||||||    
T  47132810 caatctaaataagtgatttctacatatatcaagtgttttcttttgtg-ctttttcgtgatttcgtcgtctgagtggggcgttgtgttgttcgtcgtttt 47132907  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 415
Target Start/End: Complemental strand, 23291824 - 23291778
Alignment:
Q  369 caatctaaataagtggtttctacatatattaagttttttcttatgtg 415  Q
    |||||||||||||||||||  |||||||| |||||||||||| ||||    
T  23291824 caatctaaataagtggttttcacatatatcaagttttttcttttgtg 23291778  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 415
Target Start/End: Original strand, 26535305 - 26535351
Alignment:
Q  369 caatctaaataagtggtttctacatatattaagttttttcttatgtg 415  Q
    |||||||||||||||||||  ||||||||||||||||| ||| ||||    
T  26535305 caatctaaataagtggttttcacatatattaagtttttccttttgtg 26535351  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 1742191 - 1742232
Alignment:
Q  369 caatctaaataagtggtttctacatatattaagttttttctt 410  Q
    |||||||||||||||||||  |||||||| ||||||||||||    
T  1742191 caatctaaataagtggttttcacatatatcaagttttttctt 1742232  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 31918900 - 31918941
Alignment:
Q  369 caatctaaataagtggtttctacatatattaagttttttctt 410  Q
    |||||||||||||||||||  |||||||| ||||||||||||    
T  31918900 caatctaaataagtggttttcacatatatcaagttttttctt 31918941  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 477
Target Start/End: Complemental strand, 24597445 - 24597401
Alignment:
Q  433 tcgtctgattgtggtgttgtgttgttcgtcgttttatgtggtgtt 477  Q
    |||||||| |||| ||||||||||| |||||| ||||||||||||    
T  24597445 tcgtctgagtgtgatgttgtgttgtacgtcgtcttatgtggtgtt 24597401  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 478
Target Start/End: Complemental strand, 43397302 - 43397194
Alignment:
Q  369 caatctaaataagtggtttctacatatattaagttttttcttatgtgnnnnnnnngtggtttcgtcgtctgattgtggtgttgtgttgttcgtcgtttta 468  Q
    |||||||||||||||||||  |||||||| |||||||||||| ||||        ||| ||||||||||| | ||||| ||||||||||||||||| ||     
T  43397302 caatctaaataagtggttttcacatatatcaagttttttcttttgtg-ttttttcgtgatttcgtcgtctaagtgtggcgttgtgttgttcgtcgtcttg 43397204  T
Q  469 tgtggtgttt 478  Q
    ||||| ||||    
T  43397203 tgtggcgttt 43397194  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 415
Target Start/End: Complemental strand, 4904327 - 4904281
Alignment:
Q  369 caatctaaataagtggtttctacatatattaagttttttcttatgtg 415  Q
    |||||||||||||||||||  |||||||| |||||||||||| ||||    
T  4904327 caatctaaataagtggttttcacatatatcaagttttttcttttgtg 4904281  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 415
Target Start/End: Original strand, 36691792 - 36691837
Alignment:
Q  369 caatctaaataagtggtttctacatatattaagttttttcttatgtg 415  Q
    |||||||||||||||||||| |||||||| |||||||||||| ||||    
T  36691792 caatctaaataagtggtttc-acatatatcaagttttttcttttgtg 36691837  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 464
Target Start/End: Original strand, 10929636 - 10929672
Alignment:
Q  428 tttcgtcgtctgattgtggtgttgtgttgttcgtcgt 464  Q
    ||||||||||||| || ||||||||||||||||||||    
T  10929636 tttcgtcgtctgagtgcggtgttgtgttgttcgtcgt 10929672  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 369 - 464
Target Start/End: Complemental strand, 11977118 - 11977023
Alignment:
Q  369 caatctaaataagtggtttctacatatattaagttttttcttatgtgnnnnnnnngtggtttcgtcgtctgattgtggtgttgtgttgttcgtcgt 464  Q
    |||||||||||||||||||  |||||||| |||||||||||| ||||        ||| ||||||||||| | ||||| ||||| |||||||||||    
T  11977118 caatctaaataagtggttttcacatatatcaagttttttcttttgtgttttttttgtgatttcgtcgtctaagtgtggcgttgtattgttcgtcgt 11977023  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 415
Target Start/End: Complemental strand, 8096679 - 8096633
Alignment:
Q  369 caatctaaataagtggtttctacatatattaagttttttcttatgtg 415  Q
    |||||||||||||||||||  |||||||| |||||||||||| ||||    
T  8096679 caatctaaataagtggttttcacatatatcaagttttttcttttgtg 8096633  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 415
Target Start/End: Complemental strand, 37837640 - 37837594
Alignment:
Q  369 caatctaaataagtggtttctacatatattaagttttttcttatgtg 415  Q
    |||||||||||||||||||  ||||||||||||||||||||| ||||    
T  37837640 caatctaaataagtggtttacacatatattaagttttttcttttgtg 37837594  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 428 - 478
Target Start/End: Complemental strand, 45349923 - 45349873
Alignment:
Q  428 tttcgtcgtctgattgtggtgttgtgttgttcgtcgttttatgtggtgttt 478  Q
    ||||||||||| | ||||| |||||||||||||||||||| ||||| ||||    
T  45349923 tttcgtcgtctaagtgtggcgttgtgttgttcgtcgttttgtgtggcgttt 45349873  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 477
Target Start/End: Original strand, 3394438 - 3394487
Alignment:
Q  428 tttcgtcgtctgattgtggtgttgtgttgttcgtcgttttatgtggtgtt 477  Q
    |||| |||||||| || |||||||||||||||||||| || |||||||||    
T  3394438 tttcatcgtctgagtgcggtgttgtgttgttcgtcgtcttgtgtggtgtt 3394487  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 428 - 478
Target Start/End: Original strand, 3673408 - 3673458
Alignment:
Q  428 tttcgtcgtctgattgtggtgttgtgttgttcgtcgttttatgtggtgttt 478  Q
    ||||||||||| | || |||||||||||||||||||| ||||| |||||||    
T  3673408 tttcgtcgtctaagtgcggtgttgtgttgttcgtcgtcttatgcggtgttt 3673458  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 415
Target Start/End: Original strand, 47896059 - 47896105
Alignment:
Q  369 caatctaaataagtggtttctacatatattaagttttttcttatgtg 415  Q
    |||||||||||||||||||  |||||||| |||||||||||| ||||    
T  47896059 caatctaaataagtggttttcacatatatcaagttttttcttttgtg 47896105  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 9713835 - 9713876
Alignment:
Q  369 caatctaaataagtggtttctacatatattaagttttttctt 410  Q
    ||||||||||||||| |||| |||||||| ||||||||||||    
T  9713835 caatctaaataagtgatttccacatatatcaagttttttctt 9713876  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 22305759 - 22305718
Alignment:
Q  369 caatctaaataagtggtttctacatatattaagttttttctt 410  Q
    |||||||||||||||||||||| |||||  ||||||||||||    
T  22305759 caatctaaataagtggtttctaaatataacaagttttttctt 22305718  T

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