View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_low_13 (Length: 489)
Name: NF13044_low_13
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 14 - 470
Target Start/End: Complemental strand, 33768693 - 33768237
Alignment:
| Q |
14 |
gagagaagaaccaataaagacacagtatccagaaacagagcgacgggtagcaggccaagatgcccaatccgagtcagcaaacccagacaacttcaaagga |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33768693 |
gagagaagaaccaataaagacacagtatccagaaacagagcgacgggtagcagggcaagatgcccaatccgagtcagcaaacccagacaacttcaaagga |
33768594 |
T |
|
| Q |
114 |
gaattggcagagaagaaaagtccctttgctgggcaactcttcaaatatttcaagacacgagtatcagcctggaaatgaatgtcttgggggcgagaaacaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33768593 |
gaattggcagagaagaaaagtccctttgctgggcaactcttcaaatatttcaagacacgagtagcagcctggaaatgaatgtcttgggggcgagaaacaa |
33768494 |
T |
|
| Q |
214 |
attgactaagttgctggacaacaaatgcaatatctgggcgagttgtagtgagatacaaaaggcggccaattaagcgtctgaaagcagattcatcatgata |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33768493 |
attgactaagttgctggacaacaaatgcaatatctgggcgagttgtagtgagatacaaaaggcggccaattaagcgtctgaaagcagattcatcatgata |
33768394 |
T |
|
| Q |
314 |
caagggagaatctgaatcatgtagtttcatggaagagttgcagggagtagaacaaggcttcaaagcaagatggccactgtcagagagcaaatccaaagta |
413 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
33768393 |
caagggagaatctgaatcatgtagtttcatggaagagtcatagggagtagaacaaggcttcacagcaagatggccactgtaagagagcaaatccaaagta |
33768294 |
T |
|
| Q |
414 |
tatttgcgttgattgagcaagataccactcggaaatcgagctatctcaagaccaaga |
470 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33768293 |
tatttgcgttgattgagcaagataccactcggagatcgagctatctcaagaccaaga |
33768237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 30719195 - 30719317
Alignment:
| Q |
14 |
gagagaagaaccaataaagacacagtatccagaaacagagcgacgggtagcaggccaagatgcccaatccgagtcagcaaacccagacaacttcaaagga |
113 |
Q |
| |
|
||||||| |||||||||| ||| |||| ||| ||||| || |||||| |||||| || |||||||||| ||||||||||||||| | | ||||| | || |
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| T |
30719195 |
gagagaataaccaataaatacatagtaaccataaacaaagtgacgggcagcagggcatgatgcccaatttgagtcagcaaacccaaatagcttcacatga |
30719294 |
T |
|
| Q |
114 |
gaattggcagagaagaaaagtcc |
136 |
Q |
| |
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||||||| ||||||||||||||| |
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| T |
30719295 |
gaattggaagagaagaaaagtcc |
30719317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 30701003 - 30701069
Alignment:
| Q |
110 |
aggagaattggcagagaagaaaagtccctttgctgggcaactcttcaaatatttcaagacacgagta |
176 |
Q |
| |
|
|||||||||||| |||||||||||||||||| || | | ||||||||||| ||||||||| ||||| |
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|
| T |
30701003 |
aggagaattggccaagaagaaaagtccctttgttgagaagctcttcaaatacttcaagacatgagta |
30701069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 35 - 470
Target Start/End: Original strand, 35517346 - 35517781
Alignment:
| Q |
35 |
acagtatccagaaacagagcgacgggtagcaggccaagatgcccaatccgagtcagcaaacccagacaacttcaaaggagaattggcagagaagaaaagt |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35517346 |
acagtatccagaaacagagcgacgggtagcagggcaagatgcccaatccgagtcagcaaacccagacaacttcaaaggagaattggcagagaagaaaagt |
35517445 |
T |
|
| Q |
135 |
ccctttgctgggcaactcttcaaatatttcaagacacgagtatcagcctggaaatgaatgtcttgggggcgagaaacaaattgactaagttgctggacaa |
234 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35517446 |
ccctttgctgggcaactcttcaaatttttcaagacacgagtagcagcctagaaatgaatttcttgggggcgagaaacaaattgactaagttgctggacaa |
35517545 |
T |
|
| Q |
235 |
caaatgcaatatctgggcgagttgtagtgagatacaaaaggcggccaattaagcgtctgaaagcagattcatcatgatacaagggagaatctgaatcatg |
334 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
35517546 |
caaatgcaatatctaggcgagttgtagtgagatacaaaaggcgaccaattaagtgtctgaaagcagattcatcatgatacaaggaagaatctgaatcatg |
35517645 |
T |
|
| Q |
335 |
tagtttcatggaagagttgcagggagtagaacaaggcttcaaagcaagatggccactgtcagagagcaaatccaaagtatatttgcgttgattgagcaag |
434 |
Q |
| |
|
|||||||| || ||||| ||||||||||| ||||||||| | |||||||||| |||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
35517646 |
tagtttcaagggagagtcatagggagtagaataaggcttcacaacaagatggccgatgtcagagagaaaatccaaagtatacttgcgttgattgagcaag |
35517745 |
T |
|
| Q |
435 |
ataccactcggaaatcgagctatctcaagaccaaga |
470 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
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|
| T |
35517746 |
ataccactcggagatcgagctatctcaagaccaaga |
35517781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 14 - 470
Target Start/End: Original strand, 12472520 - 12472976
Alignment:
| Q |
14 |
gagagaagaaccaataaagacacagtatccagaaacagagcgacgggtagcaggccaagatgcccaatccgagtcagcaaacccagacaacttcaaagga |
113 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||| | || |||| || ||||||||||||||||| ||||||||| ||||||||||||| || |
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| T |
12472520 |
gagagaagaaccaataaagacacagtaaccagaaatagagcaatggatagccgggaaagatgcccaatccgagccagcaaaccaagacaacttcaaacga |
12472619 |
T |
|
| Q |
114 |
gaattggcagagaagaaaagtccctttgctgggcaactcttcaaatatttcaagacacgagtatcagcctggaaatgaatgtcttgggggcgagaaacaa |
213 |
Q |
| |
|
||||||||| ||||||||||||||||| || || | | ||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||| |
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| T |
12472620 |
gaattggcatagaagaaaagtcccttttctaggaagcgcttcaaatatttcaagacacgagtagcatcctggaaattaatgtcttgggggcgagaaacaa |
12472719 |
T |
|
| Q |
214 |
attgactaagttgctggacaacaaatgcaatatctgggcgagttgtagtgagatacaaaaggcggccaattaagcgtctgaaagcagattcatcatgata |
313 |
Q |
| |
|
||||||||||||||||| || |||||| ||||| ||| ||| ||||||||||||| |||| ||| |||||||||| ||||||||||||||||||| |||| |
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|
| T |
12472720 |
attgactaagttgctgggcagcaaatgtaatatatggtcgacttgtagtgagataaaaaaagcgtccaattaagcttctgaaagcagattcatcaggata |
12472819 |
T |
|
| Q |
314 |
caagggagaatctgaatcatgtagtttcatggaagagttgcagggagtagaacaaggcttcaaagcaagatggccactgtcagagagcaaatccaaagta |
413 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| ||||||||||||||| |||| ||||||||||| ||||||||||| |||||||||||| |
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|
| T |
12472820 |
taagggagaatctggatcatgtagtttcaaggaagagtcatggggagtagaacaagggttcacggcaagatggcctctgtcagagagaaaatccaaagta |
12472919 |
T |
|
| Q |
414 |
tatttgcgttgattgagcaagataccactcggaaatcgagctatctcaagaccaaga |
470 |
Q |
| |
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|| ||| |||||||||||||||||||||||||| |||||| |||||||||||||||| |
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|
| T |
12472920 |
tacttgtgttgattgagcaagataccactcggagatcgagttatctcaagaccaaga |
12472976 |
T |
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