View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_low_15 (Length: 465)
Name: NF13044_low_15
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Original strand, 50369572 - 50370013
Alignment:
| Q |
18 |
ttttcgacgacggaatggacgactgggtcgttgaatgggcccatgtcaaggtgctgggctttgaaataaacgttgtagcccacttgggcctgggcttctt |
117 |
Q |
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| T |
50369572 |
ttttcgacgacggaatggacgactgggtcgttgaatgggcccatgtcaaggtgctgggctttgaaataaacgttgtagcccacttgggcctgggcttctt |
50369671 |
T |
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| Q |
118 |
tccaaagtttgtatgattccatcaccatagggtagtaatggttttgaatataggtagcacgaattgtgcgggattcaccgtgggaagagccacggtggtg |
217 |
Q |
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| T |
50369672 |
tccaaagtttgtatgattccatcaccatagggtagtaatggttttgaatataggtagcacgaattgtgcgggattcaccgtgggaagagccacggtggtg |
50369771 |
T |
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| Q |
218 |
gagaaagtcaaattgttcaagcaagagtgttttgagaccccttttggctgcttggtaggcggtggaacttcccatgacgccggctccgacaataatcacg |
317 |
Q |
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| T |
50369772 |
gagaaagtcaaattgttcaagcaagagtgttttgagaccccttttggctgcttggtaggcggtggaacttcccatgacgccggctccgacaataatcacg |
50369871 |
T |
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| Q |
318 |
tcaaactgagaatcctccatggataggatcaagtttttaaaaagggaaaaggattgagggagttgagtgttggtgatgctgatgcagtgtgtgttggcat |
417 |
Q |
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| T |
50369872 |
tcaaactgagaatcctccatggataggatcaagtttttaacaagggaaaaggattgagggagttgagtgttggtgatgctgatgcagtgtgtgttggcat |
50369971 |
T |
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| Q |
418 |
ttgtttaattgtatgtcaatatatagaaagggtggaatctct |
459 |
Q |
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| T |
50369972 |
ttgtttaattgtatgtcaatatatagaaagggtggaatctct |
50370013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 177 - 313
Target Start/End: Original strand, 50379897 - 50380033
Alignment:
| Q |
177 |
cgaattgtgcgggattcaccgtgggaagagccacggtggtggagaaagtcaaattgttcaagcaagagtgttttgagaccccttttggctgcttggtagg |
276 |
Q |
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|||||||||||||||||||||||||| || ||||||||||| ||||| || |||||||| || | || |||||||| || | |||||| || | ||||| |
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| T |
50379897 |
cgaattgtgcgggattcaccgtgggaggaaccacggtggtgaagaaaatcgaattgttcgagaaccagggttttgaggcctcgtttggcagcgtagtagg |
50379996 |
T |
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| Q |
277 |
cggtggaacttcccatgacgccggctccgacaataat |
313 |
Q |
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| T |
50379997 |
cggtggagcttcccatgacgccggcgccgacaataat |
50380033 |
T |
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