View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_low_16 (Length: 448)
Name: NF13044_low_16
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 22046707 - 22047145
Alignment:
| Q |
1 |
aatcttgacatcaacttccatgctttctggtccatacatttccatagaatcatatttagaagttctaatatagtttgcaaattccttcttcaatgtctgc |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22046707 |
aatcttgacatcaacttccatgccttctggtccatacatttccacataatcatatttagaagttctaatatagtttgcaaattccttcttcaatgtctgc |
22046806 |
T |
|
| Q |
101 |
aaatagaagcataaacgaaaaataaaatgaagaattgtgaatgtaaaattaccagtttgagatataaaaactaactaaccaatctatacttctcagaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
22046807 |
aaatagaagcataaacgaaaaataaaatgaagaattgtgaatgtaaaattaccagtttgagatataaaaactaactaaccaatttatacttctcagcata |
22046906 |
T |
|
| Q |
201 |
atactttgtaagtttcacttcaaaaggttttggttcaagtccaatat-ttgatatgtatgataatatggtaacttcaatgggctgaattcatctggctgg |
299 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22046907 |
atactttgtaagtttcacttcaaaaggttctagttcaagtccaatatatcgatatgtatgataatatggtaacttcaatgggctgaattcatctagctgg |
22047006 |
T |
|
| Q |
300 |
acatcaagggcaaaatgattgtcaccaaggtatgtcattaaaagaagtttgttaccattaatttcaaataattgtctcaattcaatccatcctttagtga |
399 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
22047007 |
acatcaaggccaaaacgattgtcaccaaggtatgtcattaaaagaagtttgttaccattaattccaaataattgtctcaattcagtccatcctttagtga |
22047106 |
T |
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| Q |
400 |
ttagaggaaaatgaaaacttaagttgaaatcgacatcct |
438 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |
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| T |
22047107 |
ttagaggaaaatgaaaacttaagttgaaatccacatcct |
22047145 |
T |
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