View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_low_17 (Length: 431)
Name: NF13044_low_17
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 7e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 235 - 414
Target Start/End: Original strand, 43591105 - 43591284
Alignment:
| Q |
235 |
gggtactggaatggatactcaagatacatcacctgctgttatgcttttctttgataaacaaagattcatctttaatgctggggaggtaagtttattgcgt |
334 |
Q |
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| T |
43591105 |
gggtactggaatggatactcaagatacatcacctgctgttatgcttttctttgataaacaaagattcatctttaatgctggggaggtaagtttattgcgt |
43591204 |
T |
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| Q |
335 |
ctatgaatttgtatatgttaaatcataaagaactcagcacctgttaggattgacttatttgagtttatttaccggcatga |
414 |
Q |
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| T |
43591205 |
ctatgaatttttatatgttatatcataaagaactcagcacctgttaggattgacttatttgagtttacttaccggcatga |
43591284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 6 - 154
Target Start/End: Original strand, 43590877 - 43591025
Alignment:
| Q |
6 |
gtcgaagaaaatagctccgttggtttcaacaaaagaagggcagagggtactgaaaattccggtttacccaagaaaaatcttcaactcaaagttcgaaaac |
105 |
Q |
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| T |
43590877 |
gtcgaagagaatagctccgttggtttcaacaaaagaagggcagagggtactgaaaattccggtttacccaagaaaaatcttcaactcaaagttcgaaaac |
43590976 |
T |
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| Q |
106 |
ttaatcccattaacactatttcgtatgttcaggtaatgggttggttcta |
154 |
Q |
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| T |
43590977 |
ttaatcccattaacactatttcgtatgttcaggtaatgggttggttcta |
43591025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 1830192 - 1830160
Alignment:
| Q |
374 |
cctgttaggattgacttatttgagtttatttac |
406 |
Q |
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| T |
1830192 |
cctgtttggattgacttatttgagtttatttac |
1830160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 407
Target Start/End: Original strand, 47134675 - 47134708
Alignment:
| Q |
374 |
cctgttaggattgacttatttgagtttatttacc |
407 |
Q |
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| T |
47134675 |
cctgtttggattgacttatttgagtttatttacc |
47134708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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