View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_low_18 (Length: 429)
Name: NF13044_low_18
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 193 - 413
Target Start/End: Complemental strand, 35980538 - 35980314
Alignment:
| Q |
193 |
gtatagtggccatgtaacatgtccatagaggcgcgcagacacataatgaatgaaagcgtgataatttctcaatccgttcctctatattgttcaaatctat |
292 |
Q |
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| T |
35980538 |
gtatagtggccatgtaacatgtccatagaggcgcgcagacacataatgaatgaaagcatgataatttctcaatccgttcctctatattgttcaaatctat |
35980439 |
T |
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| Q |
293 |
caaaaatacactattgaaaacgtgtttt----cgataacatgagagggtggaatgagaaattatcatgaagctttttatgtggtcattgttgtggtgtgg |
388 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35980438 |
caaaaatacactattgaaaacgtgttttcgatcgataacatgagagggtggaatgagaaattatcatgaagctttttatgtggtcattgttgtggtgtgg |
35980339 |
T |
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| Q |
389 |
tctgtggagtatatagagtaccttc |
413 |
Q |
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| T |
35980338 |
tctgtggagtatatacagtaccttc |
35980314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 35980765 - 35980588
Alignment:
| Q |
1 |
caataaagcttgttaaggagtatagtactcatgtgtaagtgcattactgggcaatgacttttttggcagtagttcacttgatcattcagatgatgcaaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35980765 |
caataaagcttgttaaggagtatagtactcatgtgtaagtgcattactgggcaatgacttttttggcagtagttcacttgatctttcagatgatgcaaac |
35980666 |
T |
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| Q |
101 |
aaactcactgccaaagaagatttgccccgcaattcactcttgtgcacattcatatactttatcaagaagaaattaagg |
178 |
Q |
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| T |
35980665 |
aaactcactgccaaagaagatttgccccgcaattcactcttgtgcacattcatatactttatcaagaagaaattaagg |
35980588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 35991494 - 35991381
Alignment:
| Q |
26 |
tactcatgtgtaagtgcattactgggcaatgacttttttggcagtagttcacttgatcattcagatgatgcaaacaaactcactgccaaagaagatttgc |
125 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35991494 |
tactcatgtgtaggtgcattactgggcaatgacttctttggcagtagttgacttgatcattcagatgatgcaaacaaactcaccgccaaagaagatttgc |
35991395 |
T |
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| Q |
126 |
cccgcaattcactc |
139 |
Q |
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|||||||||||||| |
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| T |
35991394 |
cccgcaattcactc |
35991381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 4985015 - 4985047
Alignment:
| Q |
109 |
tgccaaagaagatttgccccgcaattcactctt |
141 |
Q |
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| T |
4985015 |
tgccaaagaagattttccccgcaattcactctt |
4985047 |
T |
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